G1195514 (LOC106606343)


Basic Information

Item Value
gene id G1195514
gene name LOC106606343
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63680056 ~ 63695740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1364108
TTGGTATTAGTTTTATTTTATTATCATTGaccaaaaattacaattaaatccagTTTAATCCTACTTTTTAACacaacaaaaagtggaaaaagtcaaggggtgtgaacactttctgaaggcacagacAAAGTTTTGTTCCATTGTTAGATCATTAGCCAGCTTTTGACATTCTTTTAAAATGAAGCggctatacagtatataggacatTATTTTACATTCTTTGTTCACAAAATATAACAAGAGGAATAAAGTAGAGATACAACATAACAGTACTGCAAACCCATGATCCATTCTGTTCTCAAGTATACTACATTAGCTTAGCACCTAAGTATGGCCACAAACTTTTCTATAAcgcctctccctccccacccagtGGCACATATACTTTCTGAAAGACAATGCTtagatgtactgtaggctacttgACTATGAGAGAAATGGTTGATGTTGGGGATTGAAGTCTAAGCCCAAGATAAaggggctcagtgaatgtggTGTGGAATGCGTACAGGTGGGTCAGTTTGTCAGACTCCGAGGAGATGTTGTAGAAGGACAGGATGCCGGCCGGCCAGTCCAGAAACACCCCTATTCTATAGGactcatttgatttgatttcagggAGCCGTAAATTGTGAATAATTTTTTTATGCTGGGCAAGGAACTTATCCTTTGAGGCGTACAAAGCCCAAGAAACAGCATTCTGTCCCAGCGTTACATTCTCCCCGGCTCCTTTCCTCTCTAATATCTTGTAGGCCATGCCTATATGTACGTCGTGTAGACACTCAACCTCCAGGTAATGACGCCCGCAGAGGCCCTCCTCGCACAGCACCTGGTTGCAGTTATCAAACCTCTCTTCGGTGAAGGGATAGTCCTGCTTCTTCCTCTGGTGGGTCACCTTCCTGTTCCCCTCAGACAGGGACAGGAAATCGTTTACTGTGCTGAGGTCTAGTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1364108 True 952 lncRNA 0.43 2 63680056 63695740

Neighbor

gene id symbol gene type direction distance location
LOC110487455 LOC106601935 coding downstream 46914 63627507 ~ 63633142 (-)
LOC110487439 mkk6a coding downstream 53765 63601361 ~ 63626291 (-)
LOC110485277 LOC106602060 coding downstream 170669 63495359 ~ 63509387 (-)
LOC110487426 LOC106606390 coding downstream 218422 63448495 ~ 63461634 (-)
LOC110485274 LOC106606392 coding downstream 258558 63419349 ~ 63421498 (-)
trub1 trub1 coding upstream 3507 63699247 ~ 63700715 (-)
LOC110487444 LOC106601894 coding upstream 18642 63714382 ~ 63721873 (-)
LOC118938350 NA coding upstream 44541 63740281 ~ 63763190 (-)
LOC110487429 LOC106601877 coding upstream 102513 63798253 ~ 63812083 (-)
LOC110487446 LOC106606413 coding upstream 124484 63820224 ~ 63825369 (-)
G1195499 NA non-coding downstream 40410 63638966 ~ 63639646 (-)
G1195496 NA non-coding downstream 55309 63624480 ~ 63624747 (-)
G1195494 NA non-coding downstream 59188 63620569 ~ 63620868 (-)
G1195490 NA non-coding downstream 65606 63614202 ~ 63614450 (-)
G1195489 NA non-coding downstream 73511 63605906 ~ 63606545 (-)
G1195525 NA non-coding upstream 15506 63711246 ~ 63714263 (-)
G1195529 NA non-coding upstream 40635 63736375 ~ 63790647 (-)
G1195555 NA non-coding upstream 47206 63742946 ~ 63746490 (-)
G1195554 NA non-coding upstream 52673 63748413 ~ 63755745 (-)
G1194933 NA other downstream 542334 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 598483 63032412 ~ 63218815 (-)
G1194684 NA other downstream 742983 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 753240 62899607 ~ 62926919 (-)
G1195624 NA other upstream 249336 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 638953 64334669 ~ 64362841 (-)
G1195997 NA other upstream 781230 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1098908 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1256050 64951790 ~ 64963785 (-)

Expression


Co-expression Network