LOC110487029 (LOC105029052)


Basic Information

Item Value
gene id LOC110487029
gene name LOC105029052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63973280 ~ 64040299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941900.1
GCTTAGAGCTGGAGTGCGCGCGGGATAGCACACCGGCTGGATCGGGGAGTCGCGAAGATGGAGATCCGACCAGACAGGTTTAAGGCGGTTGCAGCCAAGAATCTGGGAAAGATACACAGAATCCTAGAAAAGCGTCAGCCCAATGGGGAGACCATCGAGCTTTCGGCCGAGGGCCGCCCAGAGCttgtggaggagaaggagatgcCCGTGGTGGACTGCACCTGCTTCGGCCTTCCCCGTCGTTACATCATCGCCATCCTCTCAGGTCTGGGCTTCTGCATCTCCTTCGGCATCCGCTGCAACCTGGGCGTGGCCATCGTCAGCATGGTCAACGACCACACCGTCTGGAAGGGTAACAAGGAGGTCCTGGTGgCAGCACAGTTCAGCTGGGATCCAGAGACCGTGGGGATGATCCACGGGTCCTTCTTCTGGGGATACATCGTCACACAGATTCCCGGAGGTTTtatatgtcaaaaatataaagctAACAACGTGTTTGGCTTCGCCATAGTGGCCACATCCACTCTCAACATGCTGATTCCATCTGCTGCTCGTACACACTACAGCTGTGTCATACTAGTCAGGATATGCCAAGGCCTCGTCGAGGGCGTATCTTACCCAGCATGCCATGGGATCTGGGCCAAATGGGCCCCGCCTCTAGAGAGAAGTCGACTGGCCACAACAGCATTCTGTGGTTCCTATGCGGGAGCTGTGGTGGCCATGCCTCTTGCTGGGGTGTTGGTTCAGTATGTAGGGTGGCCTTCAGTCTTCTACGTCTATGgcaGTTTTGGGATAGCATGGTATCTCTTCTGGATCCTGGTGTCGTATGAAAGCCCGGCAGCCCACCCCACTATCACCCCTGAGGAGAGGAAGTACATTGAGGAAGCCATCGGAGAGTCAGCAGGTTTTGCCAATCCTCTACAGAAATTCAAAACCCCGTGGAGAGCATTCTTCACGTCCATGCCGGTGTACGCCATTATCGTAGCCAACTTCTGCAGGAGCTGGACTTTCTACCTGCTTCTCATCAGCCAGCCGGCCTACTTTGAGGAAGTGTTTGGCTTTGAGATCAGCAAGgtggGGATGGTGTCGGCCTTGCCACATCTGGTGATGACCATCATTGTGCCCATCGGGGGACAGCTGGCCGACTACCTTCGAACACACAACATCATGACCACCACCAACGTCAGGAAGCTCATGAACTGTGGAGGGTTTGGAATGGAGGCCACCTTCTTGCTGGTGGTGGGATACTCTCACACCAAGGTCATGGCCATCTCCTTTTTAGTCATCGCTGTGGGCTTCAGCGGATTTGCCATCTCAGgtTTCAACGTGAATCACTTGGATATTGCCCCCCGCTATGCCAGCATTTTGATGGGCATTTCCAACGGAGTGGGCACCTTGTCGGGAATGGTGTGCCCTCTTATAGTGGGCGCCATGACCAAACACAAGacacgtGAAGATTGGCAGGGTGTCTTCCTCATTGCTTCAGTTGTTCACTATGGTGGAGTGATTTTCTAtgGAATCTTTGCGTCAGGGGAGAAGCAGCCGTGGGCGGACCAGGAGGACACCAGCGATGAGAAGTGTGGCATCATCGACGAGGACGAACTGGCCAATGAGACGGAAGAGATGTACCGCACTGGCGGAGGGGGGCAGTACGGAGCCATGAGCCAGCCAACAGCGGGCCCCAACGGAGGAGGGGGTGCTGGAGGGGGGGCAGGGTGGGTCCAGGACTGGGAGAAGACGGAGGAATATGTTCAGCCTCCGGGATACAACCAGTAACTCtacagaggggagggagagagggagctcaCATAATGCCCTATTCAGACTTGAGATAAGTTGACTAAACGTGGACCTTAGTCTAAAAAGGCTGACTTAAGTCCATGTTAAGTATACTGTCCCTTTCTCAAGTCTGAAGAAAGGGGAgatagggaagagaggggagatagggaagagaggggagataggggagatggggaagagaggggagatagggaagagaggggagatagggaagagagagagaggtgaaataaGAAAGGGCAGATGGTTTGGAAAATGACATGTAGTGAGGGAAGATAGAGGGTTAGCAAATTGTCATAGGTGTGTTTTTGTATATACGTACATTTACACATGTGGGACATTATATGAATTGTATGCATttgaataagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgcgtgcgtgtgcgtgcgtgcgtgcgtgcatgaacATTTTGCCTGTTGACCCTGAAACTCTAATTGGGTCACTGTTGCTCACTCATCAGTTGAGTTTAATTTACATGTAATTTACTTTCAAACGAATAATTCTCCATGAGCTGTCTGTCGGCTTTGTGAGTGTCTCTGGAAATCAAATGTAAGTGTCTCGTTTTTGAAAAGCTTGTTGTTTATAAGCATGGGTGGTATGGATGACTGCGACTCGGCCCAATGCTTATTTTCAGTTGCTACTGGCCTATGTTGCACACAGCAGTCCAATGTTTCGAGCATCGGCAAAGTGGGCATTATATCCATGAGAAAGGGCCATGGGTTACTCCACTGAATCCTGTCAGAGAGCAGTTAAATGGTGCTCCAGAATTCTGTCATTATTGTCACATTACCCTCTCAGTATTTTAGGCATTTTGCCAAAATCACTGAATGCACTTATATGTAGAAGTCAATatttactgtatgtaggctactgtTCCTTTCTATATACGTTTCTATGTATTAGACAGTATTCTcccgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgggtgcAGGTGCTGGAACATTGTGCGGTGAGCATGCTGTAATGATGGTTTCATGGGTGCAGTGAGTGCACCACACAACGTGTCCATGTGACAAGAGAAGTAATGATGACTTAGGATGTTAATGTGTGAACACACGCTGCTTTATTATTTCATTTGATGAAACTTGTCGGCCTGTCAGTGAATGACTGACTGTTGGTGAATTGTGTGTTAACCTTTTGTGCAGTGATGGAAAACATGTGCGGTTGCCATTGCACCACAGCGTGCAATGTGTGTCTAGTACTGGTCTTTAGCAATATGAACTGTAtcttcaggtgtgtgtgttctgtcataCTATACAGTGTATGTTTGCGAGGCTAAGGGGGACTGTATGCTTTACGTGTCCTGAACAGAACATTTGAGCAACCAATCCTGGACTTGTTActctagttgttgttgttgttgttgtttttctgttgATTTCTTTTGTCTCTTGGATTCTTACTTTCCTGTTTCCATGTTCTCCTCCGTCTTGTTGAAACGTACCTGTGGGGATACAACATGTgaaaacacatacagacatatacatacaaaaacacacaacaaATATGACATGTATGAAATATGTATATGTGTAAAATAAAAGGTGTATATAA

Function

NR:

description
vesicular glutamate transporter 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941900.1 True 3546 mRNA 0.49 13 63973280 64040299

Neighbor

gene id symbol gene type direction distance location
LOC110487030 p-ras coding downstream 2808 63962476 ~ 63970472 (-)
LOC118936516 LOC106606377 coding downstream 21404 63912489 ~ 63951876 (-)
LOC110487454 gys1 coding downstream 109938 63838394 ~ 63863342 (-)
LOC110487446 LOC106606413 coding downstream 147911 63820224 ~ 63825369 (-)
LOC110487429 LOC106601877 coding downstream 161197 63798253 ~ 63812083 (-)
slc6a16a LOC105029051 coding upstream 6675 64046974 ~ 64078936 (-)
LOC110487478 LOC106596372 coding upstream 210643 64250942 ~ 64252653 (-)
LOC110487482 LOC106606373 coding upstream 294370 64334669 ~ 64362841 (-)
LOC110513419 LOC106601473 coding upstream 498929 64539228 ~ 64546910 (-)
LOC110513421 NA coding upstream 508396 64548695 ~ 64559111 (-)
G1195625 LOC103376403 non-coding downstream 25677 63946927 ~ 63947603 (-)
G1195610 NA non-coding downstream 62547 63910435 ~ 63910733 (-)
G1195609 NA non-coding downstream 63157 63909814 ~ 63910123 (-)
G1195608 NA non-coding downstream 63527 63909520 ~ 63909753 (-)
G1195601 NA non-coding downstream 71566 63900251 ~ 63901714 (-)
G1195677 NA non-coding upstream 79728 64120027 ~ 64120258 (-)
G1195685 NA non-coding upstream 106188 64146487 ~ 64146932 (-)
G1195707 NA non-coding upstream 183004 64223303 ~ 64224101 (-)
G1195716 NA non-coding upstream 202243 64242542 ~ 64246203 (-)
G1195723 NA non-coding upstream 206906 64247205 ~ 64247488 (-)
G1195624 NA other downstream 27516 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 467756 63495359 ~ 63509387 (-)
G1194933 NA other downstream 835558 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 891707 63032412 ~ 63218815 (-)
G1194684 NA other downstream 1036207 62935786 ~ 62937073 (-)
G1195997 NA other upstream 436671 64476970 ~ 64477372 (-)
G1196113 NA other upstream 754349 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 911491 64951790 ~ 64963785 (-)
G1196208 NA other upstream 916979 64957278 ~ 64961176 (-)

Expression


Co-expression Network