LOC110513421


Basic Information

Item Value
gene id LOC110513421
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64548695 ~ 64559111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110513421
acagaagaagctgAAAAGCATCAACAGGAAGTACTTTGTTACCATCCTCTATCTAGTTTTCAAACCAAACACATTTCCACAGGATTTGCAGGATGTTTCTAATGTAAGATTAGTCTAAATGAGACGTTCATTTGTCACAACTGAAATGGAGTTTTGATATTTATAAAGTTGTGGTCGAGCTTTTCTTTATCTGAACGTTGTGACAAAGAAAGTAACTAGCATACACATTTAGTGTCGTTGTTTATTTTTTTAGAAAGAATAAGCTTCCACGATGGACCGGGACAGAGCTAGCCCGTCCCCCTCCACCCTGCCGGAGTCCCCTGGTCACAACTCTCCTGGTAACGCCTTACTGCTGGATCTGAAGAAGGTGTCTGTTTGGCTGGTCGACTGCAGGAAAACAGCAGGgcagagtggaactgtgagagaagGACACGAGGAGGGAGATTTGATTTCATCAAGGGACACCCCTAAGTGTTGTTCTCTCAGTGGGAGGGGCTTAtcatctggggagcctcaacaacatcctgttgctgacgagacagagaagagtctctccagatcagaacatctcaagaaacaccagcagagacGTACAGGGAAGAAACCTcaccactgctgctctgacttTGGGAAGAGTTTCACAAGCCAGAGTGGCTTCATTattcagtgtgggaagagttttgcttcTTCTAACACCTTCAAATCTAATGTAAGAattcatacaggggagaagccttacccctGCCTTGATTGTGGGAAAAGCTTTGTTCGTGCAGGAGCCTTAACCAGACACCAGCGGACACACACTGGagtgaagccttatagctgtgatcagtgtgggaagagcttcaatcagtcagtcaacctgactacacaccagcgaacacactctggagagaagccttatagctgtgatcagtgtgggaagagctttgttCAGTCAGTCCACCTGACcacacaccagcgaacacacagtggagagaagccttatagctgtgatcagtgtgggaagagcttcaatcagTCAGTCCACCTGACTAGACACCAGCGAACACactctggagagaagccttatagctgtgatcagtgtggaaagagctttgctgTATCAGAAAAACTAACCatacaccagcgaacacacactggagagaagccttacagctgtgatcagtgtgggaagagctttgttCAGTCAGTCCACCTGACcacacaccagcgaacacacagtggagagaagccttatagctgtgatcagtgtggaagGGGCTTTTCTCAATCAGTAACCCGGAATAAACACcagcgaatacacacaggagagaagccgtatagctgtgatcagtgtggaaagagctttgctgTATCAGAAAAACTAACTATACACcagcgaatacacacaggagagaagccttatagctgtgatcactgtgggaagagctttgctgtaGTTTCCTCCCTGATTagacaccaggtaacacacactggagTGAGAACTTATGTCTGTctatgtgggaagagctttggtCTAGCTTCCTCCCTTACtatacaccagcgaacacacactggagagaagccttatagctgtgatcattgTGGAAGGGGCTTTTCTCAATCAGTAACCCGGAATAAACACCaacgaacacacacaggagagaagccttatagctgtgatcagtgtgggaagagctttgctacAGGTTCCACCCTGACtacacaccagcgaacacacactggggagaagccttatagctgtgatcagtgtgggaagagctttgctgcAGGTTCCACCCTGACTaaacaccagcgaacacacactggagagaaagaaGCCTTATatctgtgatcagtgtgggaagctTTTCAGTCAGTTATGGACCCTTTATTCACACCAGTGAACACACACTGGCGAAGGAACCTTATGTCTGTCTAGGTGGGAAGAGCTCTGTTTATTTAGGGCCAATGAGAAAACACCAGAAAACACAAACATGCTGTATTTCATCTTCCTCCCATCTGGCACCGGTTCCAGATCCCTAAATAAAGGATCAGTAGAAAACATCTAGTGAACAGTCGTATCCATCTCCCATTCTTAACTCTTTGGGATAGCGGGATGCCTcgtcaacatccggtgaaattgcagatcGCGAAATTCAAAATGACAGAAATAGAACTactaacattcatgaaaatacatgtatcatacatcaaaataaagcttaacttctttttAATCCAGCCACtgcgtcagatttcaaaaaggttttacggcgaaagcagaccaccatctgaggacagtgccccacatacaaaagcatgaaaaacaatttcaagccaagtagaggagtcaagaaagtcagaaatagcgataaaatgaatcacttacctttgaagatcttcagcTGGTTGCAATCATAAgagtcccagaaacatcacaaatggtccttttgttcgataaagtccttttaTTAAAAAAAGttagtttagctggcgcgctttactcagtaatccaccggtttccctcgttGAAAAATGCAAACAAAAGTTCTAAAAGCTATTGGCAAACTTTGTCGAAACTAGTCAAACAACGTGTCTATATCATCCTCAGGTTGTCtgaaatgtaaataaactataatatttcatatggaAAGCCTGTGATtgaatttcttttttttctggTTGGATTTTCTTTGTGTTTTTGCCAGCCATGTCAGTTCTGTTTtcctcacagacattattttgacagttttggaaactttagagtgtttggGCCTGAGAAAGTgggcctgagaaacaggcagtttacttgcACGTTTTTCATTCAAACGTCTCAATACTGCCCCCGTTCCCATAAAGGTTAAACAGTTGCCTTAGTCTGATCACCATGGTAACCTATGTGGAGCATAATATGCAGCTCTGATCTAGCATCAGGTCTCCACTGTGTCTATGTAATATCACACATTGGGCTCTAAATGGATAAATG

Function

NR:

description
LOW QUALITY PROTEIN: zinc finger protein 883-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110513421 True 2974 mRNA 0.44 3 64548695 64559111

Neighbor

gene id symbol gene type direction distance location
LOC110513419 LOC106601473 coding downstream 1785 64539228 ~ 64546910 (-)
LOC110487482 LOC106606373 coding downstream 185854 64334669 ~ 64362841 (-)
LOC110487478 LOC106596372 coding downstream 296042 64250942 ~ 64252653 (-)
slc6a16a LOC105029051 coding downstream 469759 64046974 ~ 64078936 (-)
LOC110487029 LOC105029052 coding downstream 508396 63973280 ~ 64040299 (-)
LOC110513418 NA coding upstream 1775 64560886 ~ 64571557 (-)
LOC110487483 LOC106606297 coding upstream 14183 64573294 ~ 64586429 (-)
LOC110513427 NA coding upstream 22978 64582089 ~ 64600022 (-)
LOC110485289 NA coding upstream 42864 64601975 ~ 64611588 (-)
LOC110487475 NA coding upstream 55705 64614816 ~ 64624740 (-)
G1196005 NA non-coding downstream 55175 64493036 ~ 64493520 (-)
G1196004 NA non-coding downstream 55782 64492394 ~ 64492913 (-)
G1195994 LOC106606292 non-coding downstream 58871 64488076 ~ 64489824 (-)
G1195998 NA non-coding downstream 70461 64478027 ~ 64478234 (-)
G1195993 NA non-coding downstream 72154 64475771 ~ 64476541 (-)
G1196025 NA non-coding upstream 1136 64560247 ~ 64601408 (-)
G1196021 LOC106606290 non-coding upstream 35097 64594208 ~ 64615969 (-)
G1196056 NA non-coding upstream 62524 64621635 ~ 64622267 (-)
G1196024 LOC106601477 non-coding upstream 68311 64627422 ~ 64668426 (-)
LOC110510722 LOC106606296 non-coding upstream 84050 64641877 ~ 64662041 (-)
G1195997 NA other downstream 71323 64476970 ~ 64477372 (-)
G1195624 NA other downstream 602931 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 1043171 63495359 ~ 63509387 (-)
G1194933 NA other downstream 1410973 63137040 ~ 63137722 (-)
G1196113 NA other upstream 235537 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 392679 64951790 ~ 64963785 (-)
G1196208 NA other upstream 398167 64957278 ~ 64961176 (-)
G1196409 NA other upstream 694168 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 910336 65446633 ~ 65472652 (-)

Expression


Co-expression Network