G1196005


Basic Information

Item Value
gene id G1196005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64493036 ~ 64493520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1364707
caccggttagtcgggctaattgaggtagtatgtacatgtagatatggttaaaagtgactatgcagatatgataaacagagagtagcagttaAAGttaggatgaggttttgatgttggtgtgctgtcccttttttttttctctacataatgttgtgtgttccttccaaacaacccAACTTTaatttaatctgtccacagaatattttgccagtagcgctgtggaacatccaggtgctcttttgcgaactttaGACGTGCAGCAATGGTTTATTTGGACAGCAGAGGCTTCTTCCATGGTGACCTCCCACGAACGGctttcttgtttagtgttttacatattaTTGACTCGTCAGACGTTAGCATGCTCCagagttttctgtaagtctttagctgacactctaggattcttcttaacctcattgaacaTGCTGCGCTgcgctcttgcagtcatctttgcaggacggccactccaaGGGAGAGTGgaa

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1364707 True 485 lncRNA 0.43 1 64493036 64493520

Neighbor

gene id symbol gene type direction distance location
LOC110487482 LOC106606373 coding downstream 130195 64334669 ~ 64362841 (-)
LOC110487478 LOC106596372 coding downstream 240383 64250942 ~ 64252653 (-)
slc6a16a LOC105029051 coding downstream 414100 64046974 ~ 64078936 (-)
LOC110487029 LOC105029052 coding downstream 452737 63973280 ~ 64040299 (-)
LOC110487030 p-ras coding downstream 522564 63962476 ~ 63970472 (-)
LOC110513419 LOC106601473 coding upstream 45708 64539228 ~ 64546910 (-)
LOC110513421 NA coding upstream 55175 64548695 ~ 64559111 (-)
LOC110513418 NA coding upstream 67366 64560886 ~ 64571557 (-)
LOC110487483 LOC106606297 coding upstream 79774 64573294 ~ 64586429 (-)
LOC110513427 NA coding upstream 88569 64582089 ~ 64600022 (-)
G1196004 NA non-coding downstream 123 64492394 ~ 64492913 (-)
G1195994 LOC106606292 non-coding downstream 3212 64488076 ~ 64489824 (-)
G1195998 NA non-coding downstream 14802 64478027 ~ 64478234 (-)
G1195993 NA non-coding downstream 16495 64475771 ~ 64476541 (-)
G1195780 NA non-coding downstream 20629 64467778 ~ 64472407 (-)
G1196027 NA non-coding upstream 54517 64548037 ~ 64560710 (-)
G1196032 NA non-coding upstream 55320 64548840 ~ 64582554 (-)
G1196025 NA non-coding upstream 66727 64560247 ~ 64601408 (-)
G1196021 LOC106606290 non-coding upstream 100688 64594208 ~ 64615969 (-)
G1196056 NA non-coding upstream 128115 64621635 ~ 64622267 (-)
G1195997 NA other downstream 15664 64476970 ~ 64477372 (-)
G1195624 NA other downstream 547272 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 987512 63495359 ~ 63509387 (-)
G1194933 NA other downstream 1355314 63137040 ~ 63137722 (-)
G1196113 NA other upstream 301128 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 458270 64951790 ~ 64963785 (-)
G1196208 NA other upstream 463758 64957278 ~ 64961176 (-)
G1196409 NA other upstream 759759 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 975927 65446633 ~ 65472652 (-)

Expression


Co-expression Network