RNA id: TU1363541


Basic Information

Item Value
RNA id TU1363541
length 490
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1195075
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63488844 ~ 63489333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATATGATCATGTATGCCTGTAGCAAAGACAAACCAGCTTGACCTCCAGCCTGAGCTTTCATAAGGCTTATGATCTATCATAAAGGTTATACATTCATTCTTGCATTTAACAGCCAGAAGGTTTACTATTTTGGAATCATATCACAGATAAACATTGTCAGAGtcgcgtcaattcgaatctggtatcaggataaatatgacaatgagtcaccgattgtatactatgtattttttattagctaagcaataagtggtaaatgcaattttcgtatatacgggctctctgtcccacctcgcagggcaaacagagaactgacttgttcttgacaaagatattataaatATACCCTGACAGAaatagttcctgcttccgagccggcctgtcagagtagagactgggcgtggtttaaactcacccagcctatcgttgattcttggcgcagaggctggtcccagccccctaAGCGCttcagttgatagatgtaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1363536 lncRNA downstream 10279 63478162 ~ 63478565 (-) True G1195070
TU1363535 lncRNA downstream 16174 63471983 ~ 63472670 (-) True G1195069
TU1363526 lncRNA downstream 39534 63448870 ~ 63449310 (-) True LOC110487426
TU1363524 lncRNA downstream 44586 63443641 ~ 63444258 (-) True G1195058
TU1363523 lncRNA downstream 46389 63441542 ~ 63442455 (-) True G1195057
TU1364069 lncRNA upstream 87780 63577113 ~ 63577337 (-) True G1195484
TU1364071 lncRNA upstream 91678 63581011 ~ 63581400 (-) True G1195486
TU1364072 lncRNA upstream 97797 63587130 ~ 63587640 (-) True G1195487
TU1364050 lncRNA upstream 112028 63601361 ~ 63606880 (-) True LOC110487439
TU1364074 lncRNA upstream 116573 63605906 ~ 63606545 (-) True G1195489
XM_021559360.2 mRNA downstream 27210 63448495 ~ 63461634 (-) False LOC110487426
XM_021556335.2 mRNA downstream 67346 63419349 ~ 63421498 (-) True LOC110485274
XM_036941869.1 mRNA downstream 89649 63369694 ~ 63399195 (-) False LOC110487424
XM_036941876.1 mRNA upstream 6026 63495359 ~ 63509387 (-) False LOC110485277
XM_036941877.1 mRNA upstream 112404 63601737 ~ 63626291 (-) False LOC110487439
XM_036941878.1 mRNA upstream 138174 63627507 ~ 63633142 (-) True LOC110487455
XM_036941887.1 mRNA upstream 209914 63699247 ~ 63700715 (-) True trub1
XM_036941892.1 mRNA upstream 225049 63714382 ~ 63721873 (-) True LOC110487444
TU1363356 other downstream 351122 63137040 ~ 63137722 (-) True G1194933
TU1363302 other downstream 407271 63072315 ~ 63081573 (-) True LOC110486089
TU1363300 other downstream 433483 63042006 ~ 63055361 (-) False LOC110486089
TU1363301 other downstream 433483 63042006 ~ 63055361 (-) False LOC110486089
TU1363034 other downstream 551771 62935786 ~ 62937073 (-) True G1194684
TU1363571 other upstream 7765 63497098 ~ 63505524 (-) True LOC110485277
TU1364247 other upstream 455743 63945076 ~ 63945764 (-) True G1195624
TU1364356 other upstream 845360 64334693 ~ 64347407 (-) False LOC110487482
TU1364357 other upstream 845360 64334693 ~ 64347407 (-) False LOC110487482
TU1364358 other upstream 845360 64334693 ~ 64347086 (-) False LOC110487482

Expression Profile