G1192297


Basic Information

Item Value
gene id G1192297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59500400 ~ 59502519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1360167
tgtgtcccgccacccaccacccattacccgccaacccctcttttacgctactgctactctctgttcatcatatatgcacagtcacttaaACCATACCTACAATgcatatacatactacctcaatcagcctgactaaccagtgcctgtatgtagcctcgctactgttataaactcgctactgttatagcctcgctactgtatatagcctcattactgtatgtagcctcgctactgttataaactcgctactgttatagcctcgctactgtatatagcctcactactgtatatagcctcactactgtatatagtctcgctactgtatatagcctcgctactgtatatagcctcgctactgttatagcctcgctactgtatatagcctcactactgtatatagcctcactactgtatatagcctcgctactgtatatagcctctactgtatatagcctctactgtatatagcctcactactgtatattgcctcgctactgttatagcctcgctactgtaaatagcctcactactgtatatagcctcgctactgtatatagcctcactactgtatatagcctcgctactgtatatagcctcgctactgttatagcctcgctactgtatatagcctcactactgtatatagcctcactactgtatctagcctcgctactgtatatagcctcgctactgtatatagcctcgctactgttatagcctcgctactgtatataaccacgctactgtatatagcctcgctactgtatatagcctcactactgtgtatagcctcactactgtatatagcctcactactgtatattgcctcgctactgttatagcctcgctactgtatatagcctcactactgtatatagcctcgctactgtatatagcctcgctactgtatatagcctcgctactgttatagcctcgctactgtatatagcctcactactgtatatagcctcactactgtatatagcctcactactgtatatagcctctctactgtatatagcctcactactgtatatagcctcgttactgtatgtaacctcgcaactgttatagcctcgctactgtatatagcctcgttactgtatatatcctcgctactgtataaagcctcgttactgtatatagcctcgttactgtatatagcctcgctactgtatatagcctcgctactgtacatagcctctctactgtatatagcctcgctactgtatatagcctcgctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcactactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcgctactgttatttttcattcttttttactgtttttatttatctattgttcacctaataccttcttttttttacttagaaattgcactgttggttagaggctgtaagtaagcatttcactgtaaggtgaacctgttgtattcggcacacgtgacaaatacactttgatttgatttgaccaacaGCTGTCCAAAAATAGTCTCTCCTCTTTGACCAAGTCTGACTTATGTGACCAGTTTTGTGGTCCAGTTATTGATGAGGTCTTCTCTGAGCCTCTGCCCCACATCGGTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106536431, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1360167 True 2087 lncRNA 0.42 2 59500400 59502519

Neighbor

gene id symbol gene type direction distance location
LOC110516720 adcy9 coding downstream 28335 59382826 ~ 59472065 (-)
LOC110485268 LOC106601889 coding downstream 119500 59289251 ~ 59380900 (-)
LOC110485272 trap1 coding downstream 211555 59270597 ~ 59288845 (-)
prkar1b prkar1b coding downstream 307928 58987899 ~ 59192472 (-)
LOC100136119 pdgfa coding downstream 544224 58918836 ~ 58956176 (-)
LOC118938337 LOC105021644 coding upstream 21271 59523790 ~ 59543119 (-)
LOC110487009 LOC106601835 coding upstream 142065 59644584 ~ 59648914 (-)
LOC110515614 LOC105008474 coding upstream 148841 59651360 ~ 59912068 (-)
LOC110512532 LOC106606500 coding upstream 418958 59921477 ~ 59932329 (-)
LOC110516349 cfap70 coding upstream 435592 59938111 ~ 59958206 (-)
G1192296 NA non-coding downstream 495 59499031 ~ 59499905 (-)
G1192288 NA non-coding downstream 22673 59477331 ~ 59477727 (-)
G1192285 NA non-coding downstream 32798 59467363 ~ 59467602 (-)
G1192281 NA non-coding downstream 37520 59462577 ~ 59462880 (-)
G1192280 NA non-coding downstream 39297 59459882 ~ 59461103 (-)
G1192349 NA non-coding upstream 97643 59600162 ~ 59602287 (-)
G1192357 NA non-coding upstream 123302 59625821 ~ 59626678 (-)
G1192356 NA non-coding upstream 128475 59630994 ~ 59631455 (-)
G1192355 NA non-coding upstream 129504 59632023 ~ 59632924 (-)
G1192205 NA other downstream 224551 59275141 ~ 59275849 (-)
G1192158 NA other downstream 379244 59119541 ~ 59121156 (-)
G1192082 NA other downstream 591168 58906153 ~ 58909232 (-)
LOC118938340 NA other upstream 690494 60192912 ~ 60196843 (-)
G1192519 NA other upstream 703263 60205782 ~ 60208270 (-)
G1192535 NA other upstream 716647 60219166 ~ 60314554 (-)
LOC110486987 cyp2k4 other upstream 775759 60274725 ~ 60367022 (-)
LOC110486976 LOC106606471 other upstream 1055263 60460043 ~ 60565934 (-)

Expression


Co-expression Network