RNA id: TCONS_00043388


Basic Information

Item Value
RNA id TCONS_00043388
length 5394
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_021911
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38245610 ~ 38263780 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTGCCTGTCAGGACAATTCCTCTGTGTGAATCACAGGAAATCAACTTATCAGGTGTATGCCCCATTACCTGGCAGTGAATGGCAAGCCTCGACTGCTTCTGTTTTACAGGAATGGCTTCACTGAAACCCTCAGATTATGCACTGTTCTGAAAttcaaaatatttctcaaaagtCTTCTAGGAAAATTCTGAAAATTTCATAGAAGTTTGATGCCTTTCGTGAGTAATTCAGATGAATGActccttttttttccccctcacatGTCTCCTTCCTTGGTTTCATACAAGCTTTCAAgtgaattagaaaaaaataccCTAGTAAATTCCTGCTGACATGCCTACCCACCCATTGATCCCATATGTGGAAAGTCCTGATGGACTTGGTCATGACATCCTTAGCCACAGCAGTGCAAGCATGCCTGGTACTGGTTCTAGCATGACACCTCATGCCAGCTTGGTGGAAAAACCAGGCATCCTGGCAGAAAGTAGCCTGCCTCTAGACTGCATGTTTTGTGAGGAGACCTTTCTGCATCAGGAAGACTTGGGACCACACCTTCTTTCCCAGCATCCCACAACATTCCACGGACCTGCAGTATTGCGCGTGGAAGCAGAATTCCTAACCCCTGGTGACAGGGCCCGTTCTAAGACCTGCCCTGCTGTGGAAAAAAACGAGGAACTCAGTTGCGCTGTGTGCGGCCAGGCCATCAAAGATGCGACAGAGCTGGAGACGCACATGAGGAAACACAAGGACTCTTTTACATACTGCTGCAGCATCTGTGGGCGTCGTTTCAAAGAGCCGTGGTTCCTTAAGAACCACATGAGAACTCATGGGAAGACTGGGTCTAAAAGCAAAAACCATGAGCTGGAGATCCCAGCCACTGTCAATGATGTCATTCAAGACCAGCCACCATCCCCTGTGGTCACGTCATACAAAATGTGCATGGTATGCGGCTTCTTTTTCCACAACAAGGAAGCTTTGGCTGAGCACAGTAAAGTTCACAATCGAGATGCAGAAGCAGATGAGAACATCTCCACTCATGACCAACCTGCTGAGGAGCTTCCTGTATCCCAACATGCATTTTTGCAGAACCTACAGTTGCATCCTTCCGTTGCCAGAGAAGCAGAACCGAAGCATCCGACTGGACGATGGATATCACAACTCGATCCTTTCAACACCTACCAAGCCTGGCAGTTGGCCACAAGGGGCAAGATTGCGGCAGGTCCAAACTTAGCCAAGGAGCTCAATGCAGACTCTAATTCTGACAATGAAGACTCggggtctgaaaaagaggaactTGGGGCAATCTGGGCTTCCGGAGATAAACCTGCCAGACGAGGCCTAAGAAGTGAACTCAAGCCTTCAGACACTCCTTCTCCATCACCTGAGCAAAAGGGTCTGATTCGTAAAGACAAGCCAACCAATTGCGAAGAGTGTGGGAAGATCTTTAGGACGTACCATCAGTTGGTCCTTCATTCGAGAATTCACAAGAAGGAACGAGGAGGAGCGGAGAGCCCCACCACACCTGTGGATGGAAGGGCACAGAGCGTTGGTTCTTGTAGCAGCTCATCTCTGGACCGAGCAGATGAGTATTCAGAGGATGGCTCTGAAGAGGGAGTGCCAGTTGACGCCTTTAATCCAGATAAACTTGAGGATGGACAGGGTAAAATGAAGCTCAAAATTCTTGCTCCGAGAAAATGCAATTACTGTGGCAAGACTTTCCGCTCTAATTATTACCTCAATATTCATCTCAGGACACATACTGGTGAAAAGCCTTATAAATGTGAATATTGTGACTATGCTGCAGCACAGAAAACCTCTTTGAGGTATCATCTAGACAGACGTCATAAGGACAAACCGTTCACGGAAATCCCGAACATTCCCGCCACACCGTCTGCTAGAAATATCATCAAGGCCATTGAACCTCCCAAGAATGTAGATAACAAACAAGCCTCAAAACCACCCAAACAATGGCTTGCTCCTAAACCTCTCCCTGCCAGTGTTAAACATGAACTAGGCACGAGCCAGGTTATCAAAAGCACAAGTCCTTCCATTCAAGTTAAGCAAGAGTTTGTAAGTTCTCCTGTCGCAACTCCGTACACCCCTTTGAGCGAGGACAACAAAAAATACCCATTACCAGCAAATCTGAAAATGGAGGAGAAAGAAGCTTCTGAGGCACCACTGAATCTGTCTCTCAAAGTGTCTCTCTCTATATCTGCTACCTCAGTACCCAGAAACCTGTTACTGACCAACACGTGTACCTCTTGCTCCTATGAGACCCTTTATCCCGAGGTTCTCCTGATGCATAAAAAGCTTATCCACAAGCAGAATTTGGACATCAAGAAGAACGGATACAGGGGACCTCAGAAATTGAAACGGTACACTGGTTGCCCACCAGCTCTTGAAGGCAAAGATGTCGCTCCTTTGGCCCACATCAACAGGAGGCATCCACGTCGAACCAAATCCCCTCTACGCCAACCTCCGGAGAAGCTTCAGAAACCTCCTCAGATGTCTAAGGTTTCTCCTGTGAAAGAGCGCTGGAGAGATCAGCACCGGGGCAGAGAACTGGATGCAACCAACTTGCTGCCTAGAAAGCCAGAGCAAGAGTCTAGCAGGAAATTCAACGTGCCGTCGGTAATCGATAGGGAGCTTCCCAAGCAGAAGCCTGTCCTGGATCATGAGATGAATCAGAGGATGGGCAAAAACGGAATGGTGTGGCCCACGGATCCAGCGAGGCTTTGCCTTTCGGATCGTTTTCGAAACTTGACTCAAATGGAGGTCGGGGAACCCTCCAGCAAAAGACAGAAGTCCTTTGAGCCTCTGCATACTGCATCAGGGCGGCTTGGAGAGGATTTCAACAGGCTTGTGCCCTCAGGCAGGAACGCTAAAACCTCGTTGCAGACACATTCACCCTTGGCTTCGATTAAGGTGACCCCTACAGCGTCTTCAAACAGCATGCAGCCTGACTGGAATGTCATGAACATGCTCCGCACCTACACTCCCAACAACCTGGCCTCGCTCTATCATCCCATCGCTCCAAGTTCCAGCCATGGTGTCATGTCCTCACCAGTTTCCGGGAGCAGGTCCTTGATCTTCCCTCAATACTCCACTAGCATGTCTCAGAGGAGAATCCAAAGCAGCCCTCTGAATAATGAACGCTGTGGTGGACCTTCAGATAAGAGCTCTTAGAAAATATCCAGGCTTCCAAACAAGCAGAGAAAATGTTGACCACATCGCCATCGGCTTTAAGAAGAAAAGTTTAActgttagtttttgttttttggggaCGTTCTTCAGACACTAATGCTGAAGGGTTTGACGTGTTGAAAGGATGAACACTGTAAGGTTGCAATCTCTGGACCGGAAGACTATACGAATATAAACTGCAGCCTCAGACGGTGTTGTTTTGATTCAATTTGCATTCCATTACGGCAATAGATTAATCTGCGGTGCACTTAACACAAAGTCAGACGCACGACAGTTGACTTGTGAATCTATTGTGGGTCAGTGGGCTTATATGATGGCTTGAGTACTAATCAAACcgcaaaaaaaaaacccaaacaagTGCCTCAATTACCTTTTATACGAGCGAACGGCACTGACCAAATAAACAAGGAGTAGTCAGGGGACTTGTGCTCCTCTGATAGTGTAAGATTGTCTATATTGTTAATGTTTAACATCCTCTACAGGTCAACTTGATGCTATGCAGAGaacaggatgtttttttttttctgaaagtacaAAATCTAGCTGCTGTGTTACTGTCTCGGATTTGAGACTTTTGGAAAGCGATGGTGACGTACTGTGTACTGTTGTGTTGGTACATTtataaagcaaataaaagcaATGCAGGGACTGCGTGAAACCTCTTTCACTGTGACGACAGACATTCAATGTAATCCTCAGGATTGTTGAGAAACATaactgtgatttattattattttttattattattattatttctgcgCCGCCAATGCTGAGCAGTTTCGCCTAAATGTGTGGTGAACgtttttgttgtagttttgttGAACACCAGAATGTTTTTGTTATCGCGTCTTTTTAATCTAATAATCAAGTGTATTTATTTTCAGGCGAGTGTGTTACTTCAGTAGGTTGTCTTTGTGTCTTTATAGCTTGTTCTGGTTTCTGTTACTTTCTGTGTTCAATATActaactctttctttctttctccctaAAGACCACCGGTAAAGTTAacttatttcataatatttaaggGGTTTTCATGAGCTTGAAGCAAATGCGTCGTATTTCCTTGATTAATAAACTTGAAGCCTATTTGTTTCTCTATTTTGCTTCACTCCTCAATAAGGAATTACctcttatttagttttttttgggcGGATTTGTAGATCGTTTATGATAAATGATGGCTGTCGCTGTCTTGATGATGGATTTCGGGTCACCAACGCTGCTTTACGCCAGTATAAATtcaatcctttttttttgttctcgCTCAGTATTTCAGCTGTAGATGCATTGAATTGGTAGTTTGGTTTAGGAAGACGTAGCGGCAGCCATGTGTAAATTTATTagtatttgtactttttttttttttttttttcaactctaGGGTGTATTTGTTCCcaatttttttgtctttcttttgcaCTTTCACTAATGATATTGTGTCGTTAGTTTCTTTCTTGTGGTAAGGATATCACAGGcgtgcaaaacaaaaaaataatgaagcGGAGATGCTTTTCTACTCCATCTTGTCCATTGTTTCATAAATGATGCTGTTTGGTCTTTAACAGAATGTGTAATTTTGGATTTACAGTCTTTGTAACTCACCTTGTTATTAAGCCAGGTGTATTGCAGACCCCCAGAATAAAGCAGTTGCGGAAACTGGAAGAAATGTCATTGTTTCATTTGAGTAGACTCTGAGGATTAAACATGCTGGTTTAAGGGTGagctgtgttttattttaatcttgAATGGGGAGGTTGTATAAAACTGGTAATACTGCaatgtctgggtcagttggcatttctgtgtggagcttgaaTGTTCTTTTTGTGGTCGtgtaggtttcccccacagtccaaacacatgtgctgtaggtgaattggaaaagctacattgtccgtagtgtatgtcctggtcctccagaatgggggttgagcattgggctaacaactcgcctcataaaaactagatttTACGGAACAGCAATAGTGTGGCTAAATGTCAACTTGGATAtgaatggccctgggagtaaataAGTAATAATGCATTATAATTGTCAAAATTTGGAGTCATGATTTGACAAAAAGCACTTTTGGCATGAAATTATGGTAGTTAATCCTTTTGTGGCTTTACCCTTACATGAGTCATTAGAAATGAAACATTCATGTGTAATTGTGCAGTTTGAAc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2542 Predicted to enable metal ion binding activity. Orthologous to human ZNF217 (zinc finger protein 217).

Ensembl:

ensembl_id ENSDART00000129593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043381 lncRNA upstream 157304 38091978 ~ 38094560 (+) False XLOC_021909
TCONS_00043384 lncRNA upstream 157304 38092553 ~ 38094560 (+) True XLOC_021909
TCONS_00044895 lncRNA upstream 157700 38091326 ~ 38094164 (+) False XLOC_021909
TCONS_00043380 lncRNA upstream 157700 38091978 ~ 38094164 (+) False XLOC_021909
TCONS_00044691 lncRNA upstream 347168 37904470 ~ 37904696 (+) True XLOC_021907
TCONS_00043390 lncRNA downstream 2383 38266163 ~ 38295365 (+) False XLOC_021912
TCONS_00044896 lncRNA downstream 2513 38266293 ~ 38283684 (+) False XLOC_021912
TCONS_00044692 lncRNA downstream 2523 38266303 ~ 38294466 (+) False XLOC_021912
TCONS_00044693 lncRNA downstream 2830 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00044897 lncRNA downstream 273788 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00043385 mRNA upstream 69107 38159715 ~ 38182757 (+) False XLOC_021910
TCONS_00043386 mRNA upstream 70271 38171186 ~ 38181593 (+) True XLOC_021910
TCONS_00043379 mRNA upstream 277541 37955041 ~ 37974323 (+) True XLOC_021908
TCONS_00043377 mRNA upstream 434895 37815645 ~ 37816969 (+) True XLOC_021905
TCONS_00043374 mRNA upstream 531698 37579107 ~ 37720166 (+) False XLOC_021901
TCONS_00043392 mRNA downstream 543081 38806861 ~ 38819116 (+) True XLOC_021915
TCONS_00043393 mRNA downstream 676920 38940700 ~ 38952596 (+) False XLOC_021916
TCONS_00043394 mRNA downstream 688749 38952529 ~ 39063597 (+) False XLOC_021916
TCONS_00043395 mRNA downstream 689765 38953545 ~ 39063597 (+) False XLOC_021916
TCONS_00043396 mRNA downstream 690012 38953792 ~ 39063597 (+) False XLOC_021916
TCONS_00043382 other upstream 157304 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 157700 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 397242 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043375 other upstream 453452 37738863 ~ 37798412 (+) False XLOC_021904
TCONS_00043376 other upstream 483708 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043391 other downstream 71980 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043431 other downstream 2042464 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 2202722 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 2213440 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 2488924 40752704 ~ 40752818 (+) True XLOC_021939

Expression Profile

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