RNA id: TCONS_00043393


Basic Information

Item Value
RNA id TCONS_00043393
length 8687
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_021916
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38940700 ~ 39063597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATTTCGACCAAAATTGGATCAAATATAGACAAAGCCAAATGTTTGGTTATATTTAGTCAtataaattgaattttaaaaaccTAGGGCGTAGTTTTGTAGCTACATTACAAGTAGCAATTCTGAGTTATTTCAATcgaaattgggtaaaatatggacaaaaccaaatGTTGGGTTATATTTAGTCATAtataagtttaattttaaaaaacccAGCGGTTGATTTTGTCCATTTTTCCtcaaaatttagttgaaataacTGAGCATGTTTAGCATTTATTGGTGCACAATGTAATATTTGATTGATTAGTGATCGACTATCAATCGTAAAATAACATCATAGTTTATATCAGCATGCCTAAATACAACAAAAACTGAATCAGCTTAAAAACTACAAGCCAAACCAATATAATAGTGTTCCAATTCATAAAACGAGACActtcaaatattaaaaaatacaatattaataaataattgagACTATTTCCCATCCACATAACAGCTGTGTTGATAAAACaattctaaaataatttttcacTCGCCTGCGCACTtacatcctctctctctctctttctctctcactcatccctccctctttctctcgctcttcCACATCTCCTCCCCCTTTCCCTCGACTCTGCATTTCTCATCAATGAAGCCTCATTTGAATAATGCGCGAGCACTTTGGACCGGAGCCAATCAGCTGTCAGAAGAGCATGATAAATCGCAAtgcattattgataataataattactttgaCATGCGCATTTCTACTCGAGGGGCTAATTTCCCCCAACCTGGAGAATTTCTAAAGGAGAGGGACTAAATAGTCTTACTATTCGCCCCTGATGGTTGTAGGTTACCATGTCGCGGCGCAAGCAGTCCAAACCACAGCATATCAATTCGGACGACCCCGCTTCGACAGAAAATGGGATCTTGCACAATAGTCAAAGTGAAGAGGATGGCAGTGATGCTAAGAGGCGACGATCGGAGGAGACAAGGGTTTGCGAAAAATGTTGCGCAGAGTTCTTCGATGAGGCagagtttcttgaacatgagagAAATTGCACTAAAAGTCAGCAGGTAGTGATCATGAAAGATGGCGATGGGAGCGAGGTGCCCCCTGAGTTCTCGCAGCGTTCTCCGGGAGATGTCTTGAGTGATCCTTGTGATCAGTCTACCAATTCATATTCAAAGCACGGTGCAGAGTCAGATGAAATGATGGAAGGAGAGTTCATGTTGAACCAGGATAACCCCTCAAATCACGATCAAGAGGTGTCTGGCAGTCCAGGGTACGTGGCATCCAGCAAATTGCAAGACTCTAATGTGACACTCGAGTCCATGGCTGCTACCAAAGTTGCTGTAACACAACACTCATCCAATTCGTCTAGTCAAAAATCTCCACCCCCACAACCACACCAAGACACACTTCTTGCAATCCCTATGATCCTGGAACAGCTGGTCAGTCTCCAGCAACAGCAACTGCAGCAGATCCAGCTAACTGAGCAGATACGCATCCAAGTGGCCATGATGGCACCTCCGAGTCTGCATGCAGCAGTGGGTGCTGTAATGGATCCACTCAAAGCGCTGGGTGCACATTTATCGCAGCAGCTCTCTGCTGCAGCCGCCCTCATTGGCAAACGGACAGGCTCCCAGTCTTTGTCCTTGGAAGCATTGAAACAAGCAAAACTACCTCAATCCGCTACTATCCCCACATCCCTTCCTGGAGGTTTGGGATCAATTCCCTTAAAACCGGACTTGAAAGGACTCCCTGATTTAGCCAGCCGACTTCCAGCGCTGCTTCCACAATCTCCAGGGGTCATAGGATTACAGAGTCCCTTTAATAACCTTGCAACAAGCATGGACCCCTCCAAAAAGGCAAAAACTAAGGGCCCTGTAGTCTCGGAGCCTCCAAAAAATGTCTCTGTTGAACACTCGTTCAAGCACAAATGCAAGTTCTGTGGTAAAACATTTGGAAATGACAGCGCTCTACAAATCCACTTGCGCTCGCACACTGGCGAAAGGCCCTTTAAATGTAACATCTGTGGAAACCGTTTCACAACTAAAGGAAACCTCAAAGTACATTTTCAGAGACACAAAGAAAAATATCCACACATCAAGATGAATCCACATCCGGTACCTGAACACCTGGACAACATGCCTTCAAACAATGGTATCCCTTATGGCATGTCTGTGCCCATGGAGGAAAATGGTTTTAGTGAAACCAAACCTGTTTTGGGAGTTCCCACAACAGGTCCCCCGGCAGGTCCCCATCCGCCAGTGCTCCAGGCATTCAAGCCCTCATTTGATATTCCAGCTGCTGGAGACCCCTACTCCCAGAGACCTTCTTCATCAGGCAGTGATGGTGCATCGATTTCTTCTGGCATGTTCGGTCAAGATATAGCAGGATCGGATCAAAGCAAAGATTCCCCTGATGCAATGGTTGGATTGCACCATATAAACGGTAACAGCCTAACTGGAGAAAATGGCTCTGGTACCGCAAAGCTTCAGCAAATGGTGGACTGCTTGGAGAAGAGGACAAATGACCCCAATGAATGTGTTATATGCCACAGAGTGCTGAGCTGCCAAAGTTCCCTCAAAATGCATTACCGCACACACACTGGCGAGCGACCGTACAAATGCAAAATCTGTGGCAGGGCCTTCTCCACCAAAGGCAACCTTAAAGCTCATTATGGTGTTCACAGGGCCAACACTCCTCTGAAGATGCAACACTCTTGCCCAATTTGCCATAAGAAGTTCACCAACGCAGTTGTTCTCCAGCAGCATATTCGTATGCACATGGGCGGCCAGATTCCAAACACCCCACTTCCAGAAAATCAGTTCGAAAGTCCTGAGGCACTGGATTCTAGCATGACCGAGGATAAGACCATTGACTCCAATGGGCATGAGGAGAGTATGGAGGAACAAGACTTTGAATTGGACAATCAGGAGAAGCTGAACTATTCTACAGAGCCCCAGCCTGTCACTAAAGACGATCAGACATTCCCAGGTCAACCATCAATGTTTACAGGCATCACTGCCCTGGAGAACCACATGAAGAACCTTACCTCTGCACTGAACCTGCAACGACAAAGCAGCACTGCTTCTGAGAGTGACAGTGGGCTGAAAGATTCCCCTTTGGGGTCTGGAGAAGTGGACTACAAGAATGACCGCAGTCCAGTTGTGTCCGATTCGGTGTCCTTCCACTCTTTGTCCCCTATAGATGGTCCCCCGAGTAATGGTCCGTCAAAATCACCAGAATCCACAAACCTAGATGATTCTGTTAAATCCAGACCAGACACTGATGCACCTCAAGATTTTAGCGAAAACAATGGAGCCCTGGACTTGACGTCAAGTTTTACTTCTAAACCAATCAAAGAGGAGCCAGGCTTGTCCTTTGCCAGTGGTGAATATGGTTCTTCTCAATTACCTTTCATGAGGGTGCCTCCGAGTTTGGTCAAGCTGGAGATGCAGATTCCTCCGGAGACTCCTATGGGTGCCCACGGCCTGTACAGCTCCCAGCTGCCTCAAGGTGCTGCCACTCCTCCTGCTTCTTCTAGTGCTCCTCGTAGGTCCACCAAGCAACATCTCTGCAACATGTGTGGGAAGAACTTTTCATCTGCCAGTGCCCTGCAGATACATGAACGTACACACACCGGCGAGAAGCCGTTTGCTTGTTCAATTTGTGGCAGGGCTTTTACGACAAAGGGAAACCTTAAGGTACATGTTGGGACTCATATGTGGAATAATACAGCAAGGAGAGGTCAACGCCTGTCATTGGATAACCCAATGGCTTTGATGGCCATGGGCAACGAGTCGAAGATGATGCCAGACATGCTGCCGCCCCCAAAGGATTTGATTCCCCCACCCATTAATTTTGACCCATCAATGTGGAACCAGTATGCTGCTGCTTTCACAAACGGGCTGACCATGAAGACCAATGAAATTTCAGTCATCCAAAATGGTGGCATCCCTCTCCCAGGAAGTCTGGGAGGTCCTTTAGTGGGCTCTACTGGGGGAATAACCAAGATGGAGTCATCTCAGATGGGCATCCCTGGCACAGTTGCAGAAATGGAAAAGAATGGCTCTGAAAGCATAGCAAAGTTTCCACATTTCATGGAGGAGGGTAAAGTGAATTAAAAAGTGAAAAGACTTCCCAGTTGTTCCCAAACCAACGGTTCATGTTGTGCTGATTGGCTTACAAGCCTGTTGGAATGTTAGGAACTGGACTATTTATTAATTCGGTCCTTAGTTGGTACAATCAAGTCATACATGTAACATTGCTTTTAAGAACTTTTGCAAATACCCTTGTTAAATGAGCCTACACCCTAAAACGGGCTACGCCTTCCTCTTAGGACTCTTACATGCTAGCAGTTGCTTCTAGTTGAATCTGATCTAACTACTGTAGtcctttttctttctctctaaTATATGCGGGTATTTTGTCTGTTATGTTTCTAGAAGTTGAATGTAAGTCTTACTTGAAATAGCTTTATTCCAGAGCAGTCTCATTAGTGATCGGACACTCTTTTTGCGAGTTGCATTGGGCTCCGCTCTATGACCCTCAGGAGGATCTCAGCCACAGGTGACCTGAGATCTCAATGTTTTAAAAGTTAACATCGTGTTCATCTCTACTCGACTACTCATGGTTCTTTTTGTTGGTAGGTCATTATTCGCAGTTACATCTGTGGCATTGATGCCAGACAAAGGTATTTGTGGAATATGTGCGTTGAAGAACGAATCGACCGTTCCACACAATCTACTGAAGGCTACGGTTTCATTGATGAACATAGTGAGTAGTTCTAGTATagatgtttgttttgaaactggATTTCAATTTCACTAAGTTATTAAGAGTTTTTCGACTGTCAATATAGTTTCTTTCTGCGCTTAATACCAAAAATTATTTCGCTAAGTGCCTGTCTTGGagtgcttttttgttttattttttctcttgttCTCCTTAATTTTTCCTTGGCCTCGCCAAGGATACCACAAGATTGTATCAAAGGCCTTTTTggatttcatattttatcaaGACCAAAATATgctatatttttgcatttagcTATAGCTTTTTCATTAAGTAATTTGGGAGTTTCCATGCTTTCAGTGGTCCATTTCAAATATTAGATTGTTGCTTTCATTTAAGACCTTTGATAGGAGTTCAAAAGGCCAGTTTAATGCTGAAATGCCTAATCATTCCTTGCACTTTATTTTTCCTCATTCTGCTAAGATCTAGACCAGGCTCAtgccatttgttttcttttatgaaCCTTTGTTTGACTCCTCATTTGCTTGCTCTACAGTTTTAGGACCCACTGAGTTTTAGAAATCTGTAAATTTACCATGCTTTTTATAATTATGAGCTAAGCAGGCATGTACATCTGGTCCCAAAAGGAGTAAGTAGTCATTCTTTTTCTGGGAAAAAGTCATGGTTTACTACCCAAATGTGTATTGATTGTTGTGGGAACATGTTTTCGAGATCGTAGCCATGCGTTCTTTCTTTAGTAAGAGGAATGAACTTTTTCTGTATGCACGCAGAGTATCTAAACCGTAAAACTTTACGCTGGTCAAATTTCTACCTCATTTAgatgtctgtcttttttttttttttttttttttttttttttttttttttttttttggcattgtgTTTGGAGTTATGGTTGCATTTGTGCTCCTATAACCTGCTGATTTCTGTAATATAATGAATGTATCGCCAGACACTTTGCACAACACTTGTTCAGAATAGGCAGACTCCTCCTGTACATTCTCTTTCAAATATGCATTTACCAAGTTGTGCCTTTTTCCctagatgttaaaaaaaaaggtGGTGTCAGATCTTGGTTAAATGGGGTCATGTCTGTATGATTGTTCAAATATTGAGTCTGTTTTAGGCTTGTTTACagtgtagactttttgtaaatgttgcttttttgtttgttcccCTTCCGTTCTGATATTTTGAGAATAAAACCAAggatgacttttccaaaacttttgcTTTTGTGCCtaagttgtcatttaatgttACTGGAACCAAACATGTAAGTACTACAAGAGGAGAAGTGGGGGAGGTATAAATGGATTGCTGAAATGCATTTTAGTACTACTGTCATTTAAGGCGAGTTGGTAATTTGTTTTGCAACGAGTCTTCGTTAAAAATGGTTCTTTAAAGATGAGATTTTGATTACTTTACAAAAAAGTACTTTTAATGGAATCATTTTAATGTGGAATTAagtttcatttattgatttatttacaaatcgAATGCATATTTAAATGTTATGTACATTACCGGTATACAATGTTGCATTATTTTAACATGTGCTATTGTTATAACTTATTTTAACTTGGTGATTTGAATCTTATAAATGACACTAAaggtaaattttatttatttttaaatgcactgtaaaacccaaaaaagtTAGGGTAACTTGAATCATTTGAGAACCTGTtataacaaaccatttaagtttgaaaaactaatcctaatgagtactgtcaaCTTAATCCATTCCATTCGAGTAAATGAAGcattttgagcacagtaaaaccaaataaacaaagaacataaaccaactgagtactgtaaagccCAACAAGTTGATGCAACTAAAGTGGTtcgtagcaatcagtttcctcaaatggtttgagttaaactaatgtacatgagtactgtgaacttgctccgtttaagttgaagtaatgaggtatttaattaactcattattttcaacagtttaaaactcttttcaaatgagtaaaattaatgttgttttttttattttgtttttggaaaCTACACTCTtcctttgataaagttgactgttgggttttacagtgtattaaatcAGTAGTTATTTTAAACCATAATATTGCAGTGTTATTGTCTATAGACattgtatactgtaaaaaaatatataaattggtATGAATTGCATTAAGAAGGTAATCTAAtagaatattttacaaaatactaCATGTTTGGCAATCTGATTAATTTTGGATTATTCATGATGTCAATCAAATATCAAATGAGAGAAttgtacttttaatatgaaaatacagAAAGAGATCCAGAAATAAATAGAGtatatataggaaataaaagaaattataaatCATTTTAGCTACATGAACATTTATTGACTGCTGGCTTTGTGCAATTCTACAAAAATTGAGGTATAAAAGTGCTCAAAATTGAAAAGGTATTCaggaaaattacaaaataaaaacatgttgtaAATAATTGAATCATACAATTTTGTAAAAACTGAAAAGTAacctaattaaatattaatttaatctaattgcaattatttatttatttattttaatcttattaCATGCAATTAGTTACTGCCAATGCTTTAAAGACCTTTCTGTAAACCAGAAATGCCCAAACGTTACCACAACCATGGTAACTTTTGATTTAGGCCACCATCCTATCTGAGAATGCTTTAGAGATTTTAAATTCAAtgtaactttttatttgtttgttttattaagctacaacttttttttttcattttaaattatgtaaattaatcACGTTTAGTTTAAAATACTTAACACAGAccgaggacaatgcagagactttggtgagcgaaTCAAGGTAaaagcagattctgcttgactagtgtattcagcattgaacttcgCTGTGTTAtcaatgtgattgtttatgttattgcaataagttatcatttaaaaagttattcCACGATAGTTAATAGTTCAAATTGATGCTTTCTATTtatcttttaatattattaaatgaattgggaaattactcatggcaaatttaatataaaatagtttGGAATATTTATCTTTGGTCCATGGCTATCAATGATATTTGATTTTAGGCCCTTTATACGTGCAAAGTTTGGGCACCGCTGTTTTAAACAATGCTTTGTTCCACACAATAAGTTATCTAATTGTTTTTCCACAAATTtgagtggactgaacataaaacaattaagttttcaaaAAATTCAAGAATCGTAATTTTTTGAGTGTTCATTGgcgtaaagttggttttatattcacatatttgaACTTACTCCTAAAcctaatataatttcagaaaactaTTCTTTGCAAGTTCTAAAtattgaaatcatattagcagctaatgactcaGAAGATTGTTCACACAGCCAGTtgctaatattgttttgaagtcatatatGTGACACATTTAATGCCAAATATTCGACGTAGCGTGTCTAGAAATTgccactgttaaaaaaaataaagaattgtgcgaatataaaaccaactttacgcaaatcattttaaataagtagtttaaacaaacagcaaacgtgtatgtgtttgtgttaaaataaagtataaacatattttatactAACAAATATGTCTGAAACATCATATTAAGCGACTAGTATGATTAAGTATATGTTAGTCTGCCATTCAACACAAAAACAGTAAATTATAGCTTAATTATAACGCAAAAAAAGCCTAATGACAGATAATAATCAGCAAATAGCCATGTACGCTGATCTGGTTGAGTCCCAGCATGTTGAATGAGCGAGCAGCCCAACCCACGAGCCTCCGCCCAGAGCTGCTCCATTGCGGACAACAATGACCGACAACATTCCGCTGCAGCCCGTCCGACACAAAAAACGACATGACAACAAACGCAGAGACGG

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060328-2 Enables chromatin binding activity. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including fin bud; mesoderm; nervous system; neural plate; and neural tube. Human ortholog(s) of this gene implicated in Duane retraction syndrome; Duane-radial ray syndrome; Holt-Oram syndrome; IVIC syndrome; and ventricular septal defect. Orthologous to human SALL4 (spalt like transcription factor 4).

Ensembl:

ensembl_id ENSDART00000065331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044897 lncRNA upstream 385405 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00044693 lncRNA upstream 643911 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00043390 lncRNA upstream 645335 38266163 ~ 38295365 (+) False XLOC_021912
TCONS_00043402 lncRNA downstream 230650 39183246 ~ 39184309 (+) True XLOC_021918
TCONS_00043408 lncRNA downstream 394589 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043411 lncRNA downstream 509610 39462206 ~ 39490351 (+) False XLOC_021921
TCONS_00043420 lncRNA downstream 762053 39714649 ~ 39718834 (+) True XLOC_021925
TCONS_00044694 lncRNA downstream 799892 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00043392 mRNA upstream 121584 38806861 ~ 38819116 (+) True XLOC_021915
TCONS_00043389 mRNA upstream 676920 38251864 ~ 38263780 (+) False XLOC_021911
TCONS_00043388 mRNA upstream 676920 38251864 ~ 38263780 (+) True XLOC_021911
TCONS_00043387 mRNA upstream 677438 38245610 ~ 38263262 (+) False XLOC_021911
TCONS_00043385 mRNA upstream 757943 38159715 ~ 38182757 (+) False XLOC_021910
TCONS_00043395 mRNA downstream 949 38953545 ~ 39063597 (+) False XLOC_021916
TCONS_00043396 mRNA downstream 1196 38953792 ~ 39063597 (+) False XLOC_021916
TCONS_00043397 mRNA downstream 1248 38953844 ~ 39063597 (+) False XLOC_021916
TCONS_00043398 mRNA downstream 4876 38957472 ~ 39063597 (+) False XLOC_021916
TCONS_00043399 mRNA downstream 5142 38957738 ~ 39063597 (+) False XLOC_021916
TCONS_00043391 other upstream 604816 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 846140 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 846536 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1086078 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 1172544 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 1353648 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 1513906 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 1524624 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 1800108 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 3238643 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14231 True 3592 lncRNA 0.27 4 CI01000001 808607 ~ 814415 (+)