RNA id: TCONS_00043402


Basic Information

Item Value
RNA id TCONS_00043402
length 779
lncRNA type lincRNA
GC content 0.45
exon number 3
gene id XLOC_021918
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39183246 ~ 39184309 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACAGTGAAGAAGATCAAGAAAATTGGTGCATTCATCCAAAAGCTTTTTGGGTTCTCGGCACAGCCTAAGACTGTTGAAATATGTCAGGTTGACACAGCGCAAACAAGTGTTCCTGAGCCAGAAGCTGAATTGGATCTGGTTGATCCGGAAGGTGTCCCAAGTCCAAGCGGTTCTGAAAAGGAACCTGTGCCAACAGAAAGTATGGACGTCAACATCACAGATGCCATGAACCCAACAGaaagtacCAAAGTGAGCAAGATTAGCAAAATCTGTGCATTCTTCAAAAAGCTTCATGGCATCACAGCAAAGCTTAAGACCAAACCTGATGCACCACAGCGGTTGAGTGTCCCAGATGCAAGCACTCCTGATGTGACTGACCCAACAGGGCCTTTGAACACCAGTGTGACCGATGAGGATGCCGTGGATTATTCTCCTGAAACCCCTGAAGATCACCGGCCAACAGgAATCACCAAAGAGTGGATGATGAATAAACTTTCTGAATTCTACTACAAGCTTACAAGTCCTAGACACGATCTTGGAAAGCCGGGTCCAAGCAGTTTGCCTCCTCACAAACTGCTGGAAGAAATTTTCGACTTTGAGAAGCTTGCAGAGTTATTACAAATAGAAGCCACCGTGAACAAATGTACACTGCCCCTGTCACCATATACGGAGGTCTGGCGCAATGTCTACATTGGAGATGAGTAAGTCTACAGCACAAAAACAGCATAGACCATGTGATAAACTAAAATGAGGGAGTATTAATAGGAATCAAGTAAG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044897 lncRNA upstream 627951 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00044693 lncRNA upstream 886457 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00043390 lncRNA upstream 887881 38266163 ~ 38295365 (+) False XLOC_021912
TCONS_00044692 lncRNA upstream 888780 38266303 ~ 38294466 (+) False XLOC_021912
TCONS_00044896 lncRNA upstream 899562 38266293 ~ 38283684 (+) False XLOC_021912
TCONS_00043408 lncRNA downstream 162876 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043411 lncRNA downstream 277897 39462206 ~ 39490351 (+) False XLOC_021921
TCONS_00043420 lncRNA downstream 530340 39714649 ~ 39718834 (+) True XLOC_021925
TCONS_00044694 lncRNA downstream 568179 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00044898 lncRNA downstream 1340085 40524394 ~ 40526983 (+) True XLOC_021937
TCONS_00043401 mRNA upstream 18380 39089574 ~ 39164866 (+) True XLOC_021917
TCONS_00043394 mRNA upstream 119649 38952529 ~ 39063597 (+) False XLOC_021916
TCONS_00043395 mRNA upstream 119649 38953545 ~ 39063597 (+) False XLOC_021916
TCONS_00043396 mRNA upstream 119649 38953792 ~ 39063597 (+) False XLOC_021916
TCONS_00043397 mRNA upstream 119649 38953844 ~ 39063597 (+) False XLOC_021916
TCONS_00043403 mRNA downstream 96920 39281229 ~ 39332589 (+) False XLOC_021919
TCONS_00043404 mRNA downstream 96920 39281229 ~ 39333312 (+) False XLOC_021919
TCONS_00043405 mRNA downstream 146907 39331216 ~ 39333313 (+) True XLOC_021919
TCONS_00043406 mRNA downstream 162465 39346774 ~ 39449965 (+) False XLOC_021920
TCONS_00043407 mRNA downstream 162621 39346930 ~ 39450700 (+) False XLOC_021920
TCONS_00043391 other upstream 847362 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 1088686 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 1089082 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1328624 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 1415090 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 1121935 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 1282193 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 1292911 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 1568395 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 3006930 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

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