Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043411 |
| length | 1212 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_021921 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 39461989 ~ 39528988 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0019417 | sulfur oxidation | biological_process |
| GO:0030042 | actin filament depolymerization | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0071949 | FAD binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081022-3 | Predicted to enable FAD binding activity; actin binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen. Predicted to be involved in actin filament depolymerization and sulfur oxidation. Predicted to be located in cytoplasm. Orthologous to human MICAL1 (microtubule associated monooxygenase, calponin and LIM domain containing 1). |
| ensembl_id | ENSDART00000031616 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043408 | lncRNA | upstream | 36410 | 39347185 ~ 39425796 (+) | False | XLOC_021920 |
| TCONS_00043402 | lncRNA | upstream | 277897 | 39183246 ~ 39184309 (+) | True | XLOC_021918 |
| TCONS_00044897 | lncRNA | upstream | 906911 | 38537568 ~ 38555295 (+) | True | XLOC_021914 |
| TCONS_00044693 | lncRNA | upstream | 1165417 | 38266610 ~ 38296789 (+) | True | XLOC_021912 |
| TCONS_00044692 | lncRNA | upstream | 1167740 | 38266303 ~ 38294466 (+) | False | XLOC_021912 |
| TCONS_00043420 | lncRNA | downstream | 224298 | 39714649 ~ 39718834 (+) | True | XLOC_021925 |
| TCONS_00044694 | lncRNA | downstream | 262137 | 39752488 ~ 39752964 (+) | True | XLOC_021926 |
| TCONS_00044898 | lncRNA | downstream | 1034043 | 40524394 ~ 40526983 (+) | True | XLOC_021937 |
| TCONS_00044899 | lncRNA | downstream | 1324392 | 40814743 ~ 40815221 (+) | True | XLOC_021940 |
| TCONS_00044900 | lncRNA | downstream | 1367849 | 40858200 ~ 40866526 (+) | True | XLOC_021941 |
| TCONS_00043407 | mRNA | upstream | 11506 | 39346930 ~ 39450700 (+) | False | XLOC_021920 |
| TCONS_00043406 | mRNA | upstream | 12241 | 39346774 ~ 39449965 (+) | False | XLOC_021920 |
| TCONS_00043409 | mRNA | upstream | 12241 | 39413163 ~ 39449965 (+) | True | XLOC_021920 |
| TCONS_00043405 | mRNA | upstream | 128893 | 39331216 ~ 39333313 (+) | True | XLOC_021919 |
| TCONS_00043404 | mRNA | upstream | 128894 | 39281229 ~ 39333312 (+) | False | XLOC_021919 |
| TCONS_00043414 | mRNA | downstream | 68157 | 39558508 ~ 39597901 (+) | True | XLOC_021922 |
| TCONS_00043415 | mRNA | downstream | 115757 | 39606108 ~ 39607679 (+) | True | XLOC_021923 |
| TCONS_00043416 | mRNA | downstream | 121337 | 39611688 ~ 39626681 (+) | True | XLOC_021924 |
| TCONS_00043418 | mRNA | downstream | 205476 | 39695827 ~ 39727347 (+) | False | XLOC_021925 |
| TCONS_00043417 | mRNA | downstream | 205476 | 39695827 ~ 39727347 (+) | False | XLOC_021925 |
| TCONS_00043391 | other | upstream | 1126322 | 38335760 ~ 38335884 (+) | True | XLOC_021913 |
| TCONS_00043382 | other | upstream | 1367646 | 38092005 ~ 38094560 (+) | False | XLOC_021909 |
| TCONS_00043383 | other | upstream | 1368042 | 38092010 ~ 38094164 (+) | False | XLOC_021909 |
| TCONS_00043378 | other | upstream | 1607584 | 37851830 ~ 37854622 (+) | True | XLOC_021906 |
| TCONS_00043376 | other | upstream | 1694050 | 37750334 ~ 37768156 (+) | True | XLOC_021904 |
| TCONS_00043431 | other | downstream | 815893 | 40306244 ~ 40306371 (+) | True | XLOC_021932 |
| TCONS_00043437 | other | downstream | 976151 | 40466502 ~ 40472088 (+) | True | XLOC_021935 |
| TCONS_00043438 | other | downstream | 986869 | 40477220 ~ 40480582 (+) | True | XLOC_021936 |
| TCONS_00043441 | other | downstream | 1262353 | 40752704 ~ 40752818 (+) | True | XLOC_021939 |
| TCONS_00043458 | other | downstream | 2700888 | 42191239 ~ 42191353 (+) | True | XLOC_021959 |
