RNA id: TCONS_00043405


Basic Information

Item Value
RNA id TCONS_00043405
length 2098
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_021919
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39281229 ~ 39333313 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTTGCCTTCCTCCGCCGGCCGCTCAACCTAATCGACGTCATCGCCATCCTGCCCTACTACATCACGCTGGTGGTGGACAGCACCTCCACGGGGGAGAAGCGCCTAGGCTCGGGCAGCAGTTACCTGGACAAAGTGGGCCTTGTGCTGCGTGTTCTGCGGGCGCTGCGGATCCTCTACGTTATGCGTCTGGCAAGACACTCGCTGGGACTCCAAACACTTGGTTTGACAGCGCGTAGATGTACACGAGAGTTCGGTTTACTCCTGCTATTCCTCTGCGTCGCGATAGCGCTTTTTTCCCCACTGCTCTACCTGATTGAAAACGAAGCCGCAGCCACGAGGGAGTTCAGTAGCATCCCTGCCACATACTGGTGGGCTGTTATTACAATGACCACGGTTGGATATGGAGATATGGTGCCGCGCAGTATCCCAGGACAGGTGGTAGCACTTAGCAGTATCCTCAGTGGGATCCTGCTCATGGCGTTCCCGGTAACCTCCATCTTCCACACTTTTTCCCGCTCCTACGTAGAGCTCAAGCAGGAACAACAGCGGCTGCTCCAGCGCAGGACTCACTTCCTACTGCGCAGCCGCATCGCAGGGCTGGGCAGCGACCTGTCGTTGGAAAGTGATGTGCTGTTTCCTAGTGTGTCATCTGAACATAGAAACCGAGAGGAGTAAACGTACTGAATTGAGGATGTGTGGAATATGAAGCAgcttctattttttttatatcttgaATATTGTATTGTGTATTATTCGACAACAGTTTTTTTAAAGACATGCTCAGTTCTGAACCATCCAGCAGAGTTTAAAGTGTTCCTATTATGTAAAGTGATTCACTCAGATCAAGTTTGATTCATGGTTTTGATTTCACCATTATGACGTTTCAATTCCCTGaaaccttcgttcatcttcaaaCCAcatatgaagatattttagatgtaatcctggagctctctcatcctacTGCGCAGCCACATTGCAACTCTGTATAGCGACTTGATTTAGTCCCGCCCCCCCCAATAAATTGTGTTATTAATTACCATTATGTTGTATCAATCCCCTGAAACCTTTGTttatcttcacaacacaaatcaagatattttagatgtaatcctggagctctctcatcctacTGCGCAGCCGCATTGCAGTTCTGAGTAGCGACCTGTTTTAGTTTCCCCCaataaattctgttattaattactcaccattATGTCATTTCAATCCCCCCGaaaccttcgttcatcttcagaacacaaattaagatattttagatgtaatcctggagctctctcatcctacTTCGCAGCCACATTGCAACTCTGTATAGCGACTTGATTTAGTCCCCCCCAATAAATTGTGTTATTAATTACCATTATGTTGTATCAATCCCCTGAAACCTTTGTttatcttcacaacacaaatcaagatattttagATGTAATCCTGGAGCTCTCATACTACTGCGCAGCCGCATTGCAGGGCTGGGCAGCGACCTGTCGTTGGAAAGTGATGTGCTGTTTCCTAGTGTGTCATCTGAACATAGAAACCCAGAAGAGTAAACATACTGAATTGAGGATGTGTGGAATATGAAGCAgcttctattttttttatatcttgaatattgtattatgtattattcgacagcagtttttttttaaagacatgctCAGTTCTGAACCATCCAGCAGAGTTTAAAGTGTTCCTATTATGTAAAGTGATTCACTCAGATCAAGTTTGATTCATGGCTTTAATTTCACCATTATGAAGTTTCAACTCCCTGaaaccttcgttcatcttcaaaCCAcatatgaagatattttagatgtaatcctggagctctctcatcctacTGCGCAGCCGCATTGCAGTTTTGAGTAGCGACCAGTTTTAGTTTCCCCCaataaattctgttattaattactcaccattATGTCATTTCAATCCGCCCGaaaccttcgttcatcttcaaaacacaaatgaagatattttagatgtaatcctggagctctctcatcctacTGCGCAGCCACATTGCAACTCTGTATAGCGACTTGATTTAGTCCCCCCCCTCAATAAATTGTGTTATTAATTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1902259 regulation of delayed rectifier potassium channel activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-080220-5 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNG1 (potassium voltage-gated channel modifier subfamily G member 1).

Ensembl:

ensembl_id ENSDART00000160957

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043402 lncRNA upstream 146907 39183246 ~ 39184309 (+) True XLOC_021918
TCONS_00044897 lncRNA upstream 775921 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00044693 lncRNA upstream 1034427 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00044692 lncRNA upstream 1036750 38266303 ~ 38294466 (+) False XLOC_021912
TCONS_00044896 lncRNA upstream 1047532 38266293 ~ 38283684 (+) False XLOC_021912
TCONS_00043408 lncRNA downstream 13872 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043411 lncRNA downstream 128893 39462206 ~ 39490351 (+) False XLOC_021921
TCONS_00043420 lncRNA downstream 381336 39714649 ~ 39718834 (+) True XLOC_021925
TCONS_00044694 lncRNA downstream 419175 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00044898 lncRNA downstream 1191081 40524394 ~ 40526983 (+) True XLOC_021937
TCONS_00043401 mRNA upstream 166350 39089574 ~ 39164866 (+) True XLOC_021917
TCONS_00043397 mRNA upstream 267619 38953844 ~ 39063597 (+) False XLOC_021916
TCONS_00043406 mRNA downstream 13461 39346774 ~ 39449965 (+) False XLOC_021920
TCONS_00043407 mRNA downstream 13617 39346930 ~ 39450700 (+) False XLOC_021920
TCONS_00043409 mRNA downstream 79850 39413163 ~ 39449965 (+) True XLOC_021920
TCONS_00043410 mRNA downstream 128676 39461989 ~ 39528154 (+) False XLOC_021921
TCONS_00043412 mRNA downstream 128895 39462208 ~ 39528324 (+) False XLOC_021921
TCONS_00043391 other upstream 995332 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 1236656 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 1237052 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1476594 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 1563060 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 972931 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 1133189 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 1143907 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 1419391 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 2857926 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

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