RNA id: TCONS_00043608


Basic Information

Item Value
RNA id TCONS_00043608
length 684
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_022054
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 423351 ~ 452365 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgctacaattaggatcaaagcctgaaagagtcatcattatctgtgtgctgtttatacacacacacatcatcagaGACTCCAATATTGATGTCTTCTCTCTGTTTTTCCTGCAGTTGATGGGCTCTCTGGTTCTGGCGGTGGGTCTCTGGCTCcgactggatccaaacacagtgTCTCTTTTAGGAGAAGACGGACCTGATACCTTCTTCATCGGGGTGTACATCCTCATCGCAGCCGGTGGTCTGGTGATGCTGGTGGGTTTTTTCGGCTGCTGTGGAGCCGTGCGGGAGTCGCAGTGTCTTCTGGGATTGTTTTTTGCCTGTCTTCTGGTCATCTTTGGAGCTGAAGTTGCAGCAGGAGTTTTTGGCTTCATCAACAAAGacaagATCATTCAGGAAATAAGGCACTTCTATGATGAGTCTGCtggaaacaacaacaataatgcaaCCGTGCAGTCCTACCACACCGTATTGAGTTGCTGTGGTTCATCTACAGTGACGCCATCCTCATGTAAAAACATGGTATTTAACCAGacgtGTGACGTGGCCATTGAAGAGTTTTTCAACAGTAAGCTGTTCATCGTGGGTTACGTGGGAATAGGAATCGCTGGAGTCATGATTATAGGCATGATCTTCAGTATGGTCCTCTGCTGTGCCATCCGAAACAGCCGGGAGGTGATCTAA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-60 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN2 (tetraspanin 2).

Ensembl:

ensembl_id ENSDART00000192106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044922 lncRNA downstream 54143 369131 ~ 369997 (-) True XLOC_022053
TCONS_00044709 lncRNA downstream 170911 250690 ~ 253229 (-) False XLOC_022049
TCONS_00044923 lncRNA upstream 391663 829130 ~ 844398 (-) False XLOC_022064
TCONS_00044924 lncRNA upstream 403068 840535 ~ 844371 (-) False XLOC_022064
TCONS_00044925 lncRNA upstream 581417 1018884 ~ 1034033 (-) True XLOC_022068
TCONS_00044710 lncRNA upstream 640449 1077916 ~ 1079365 (-) True XLOC_022071
TCONS_00044926 lncRNA upstream 665728 1103195 ~ 1106137 (-) True XLOC_022072
TCONS_00043605 mRNA downstream 72205 320624 ~ 351935 (-) False XLOC_022052
TCONS_00043606 mRNA downstream 90683 320813 ~ 333457 (-) True XLOC_022052
TCONS_00043604 mRNA downstream 117344 280046 ~ 306796 (-) True XLOC_022051
TCONS_00043603 mRNA downstream 152418 262722 ~ 271722 (-) True XLOC_022050
TCONS_00043602 mRNA downstream 153293 255409 ~ 270847 (-) False XLOC_022050
TCONS_00043609 mRNA upstream 20102 457569 ~ 478201 (-) True XLOC_022055
TCONS_00043610 mRNA upstream 42956 480423 ~ 493384 (-) False XLOC_022056
TCONS_00043612 mRNA upstream 58047 495514 ~ 524780 (-) True XLOC_022057
TCONS_00043613 mRNA upstream 89035 526502 ~ 545942 (-) True XLOC_022058
TCONS_00043614 mRNA upstream 109640 547107 ~ 552539 (-) True XLOC_022059
TCONS_00043611 other upstream 43560 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043618 other upstream 181086 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043637 other upstream 780915 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043654 other upstream 2618514 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043689 other upstream 4479438 4916905 ~ 4925625 (-) False XLOC_022113

Expression Profile

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