RNA id: TCONS_00046235


Basic Information

Item Value
RNA id TCONS_00046235
length 3951
RNA type mRNA
GC content 0.51
exon number 24
gene id XLOC_023382
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17417150 ~ 18179535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGCCACCCGCCGGGATCGGACTCAAGCTCTTGCTGTGGATTTTAAGCCACATCAGCATCTCTCAGGCAGCTTCTCCATCATCCCaaaaatGTGATGAAGCTCTGGTCACACAACTACTCCACAATGCCTTCACAAGCTCTTCTGTGTTCGCTAGTAGCTATGTTCCAGGATACGCCAAACTTAACAAAAGAGGAGGTGCTGGGGGCTGGTCTCCGCTGGACAGTGATCATTACCAGTGGCTGCAGGTCGACCTGGGAAGCAGAAAACAGGTCACAGCCGTCGCCACACAGGGTCGATATAGCAGTTCTGATTGGACAACACGATACCGGCTGCTCTATAGTGACACAGGAAGAAACTGGAAACCATACCATCAAGATGGCAACATCTGGGCATTTGCAGGGAACTCCAATACAGAGAGTGTGGTTCGGCATGACCTGCAAAACCCGGTTGTGGCCCGTTATTTGCGCATCATTCCTTTAGACTGGAGTGAAGAGGGACGAATTGGCCTCAGGTTCGAGATCTACGGCTGCCCGTACTGGGCAGATGTGATTAATTTTGATGGGCAGGGGGTGATCTCTTACCGCTTCAAAATGAAGAAGATGAAGATTCTGAAGGACGTGATAGCCCTGAAGTTTAAAACATCTGAGAGTGAAGGGGTGATTCTGCACGGAGAGGGTCAACAGGGAGACTACATCACCTTGGAGTTGAGAAGAGGCCGACTTCTGCTGCAGATAAACCTCGGAAGCAATCAGCACGGCTCCATCCTGGGCCATACATCAGTGACCAGCGGCAGTCTGCTGGACGATCATCATTGGCATTCTGTAGTAATTGAGCGCTACAGGAGAAATGTCAATTTCACCCTTGATCAGCACACTCAGCACTTCCGCACCAACGGGGAGTTTGACCACCTTGACCTGGACTATGAGCTGACTTTTGGAGGAATGCCGTATTCCGGAAAGCCAGTCATAGGAGGAAGAAGAAATTTCAAAGGCTGCATGGAAAGCATTAACTACAATGGAGAAAACATCACTGACTTggccagaagaaagaaactggacACGTCTAGCTTTCGCAACTTGACTTTCTCCTGCGTGGACACACACACGTTCCCCGTCTTCTTCAATGGCACCAGCTTTCTTCAGCTGCCAGGGAGGAGGGACCACAATATGGTTTCTGTTGGATTCCAGTTTCGTTCCTGGAACCCCAGCGGCCTGCTCCTGTTTAGCTCCTTGGCAGATGGAATGCTGGAATTGGCTCTAAACGATGGAAAAGTCACAGCACACATTAACGTCACCCAGCAGAAAAACATGCGTGTGGACATTGCGTCAGGTTCTGGTCTGAATGATGGTGAATGGCATGATGTCCGCTTCCTGGCCAAAGAGAACTTTGCCATGCTGACCATTGATGGGGATGAAGCATCAGCTGTGAGAACCAACTCTCCGGTCCTGATCACCACTGGGAGCACGTACCACTTTGGAGgTTATTTTTTAAGAACCAGAGCATCCCCCATCCAGCGCTCGTTCCAGGGCTGCATGCAACTTATTCAGGTGGATGATCAGCTGGCAGACCTGACCGCAGTAGAGCAGGGAAGAATCGGAGCCTTCGAAAACGTCAGCCTGGACATGTGTGCCATCATTGACAGATGTATGCCAAACCACTGTGAACACGGAGGTCGATGCAGTCAGACATGGGACAGTTTCACATGCACCTGTGATGGCACAGGGTACACCGGAGCCACCTGTCACACATCTGTCTATGAGCAATCATGTGAGGCCTACAAGCATTTAGGAAGATCATCTGATGCCTACTGGATTGACCCAGATGGAAGTGGACCATTAGGCCCTTTTAAAGTCATCTGCAACATGACAGagGACAAGGTTTGGACGACAGTGGTGAATAACCTACCGGCACAGACAGCAGTAACTGGCTCCAGCCGGGAGAGACGGACAGTTTTACAGCTGAACTACAGTGCGTCTATGGAGCAGGTCACAGCAATAACCAACAGCGCTGAGCACTGCGAGCAGCACGTCTCCTACGCCTGCCGAATGTCACGTCTACTCAACACTCCAGaTGGGACGCCCTACACATGGTGGGTGGGCCGCGGTAACGAGAAGCACTTCTACTGGGGCGGATCTGCTCCTGGCATTCAGAAGTGTGCTTGTGGCATCGAGCGCAACTGCAGCGACTCCAAATACTACTGCAACTGTGACGCGGACCAGAAGCAGTGGAGGGATGATTCCGGACTTCTGGTGTATAAAGACCATTTACCGGTCAGTCAAGTGGCTGTCGGGGACACAAATCGACCCGGTTCGGAAGCCAAGTTGACCGTGGGACCTCTTCGTTGCCATGGAGACCGAAGCTACTGGAACGCAGCGTCCTTCAACACGCCATCTTCGTACCTGCACTTTTCCACTTTTCAAGGTGAAACAAGTGCTGATATCTCCTTTTACTTCAAGACCTCCGCTCCCTATGGCGTCTTCCTGGAAAACCTTGGAAACACCGATTTCATCCGTCTGGAACTGAAATCACCTATGGTGGTGTCGTTTTCTTTCGATGTCGGAAACGGACCAGTGGAGCTGAACGTCCACTCTCCTACCCCATTGAATGATGACCAGTGGCACCGGGTCAGTGCTGAGAGAAACACTAAAGAGGCTATTCTTCAACTAGACCAGAAATACAAGGAGATCAGACCTGCACCTACACAGGGCCACACGCGCCTGGAGCTCTACAGCCAGCTGTATGTGGGTGCAGCAGGAGGTCAGAGAGGATTTTTGGGATGCATTCGCTCTCTGAAGATGAACGGCGTGACCCTTGACTTAGAAGAGAGGGCGAAAGTCACTCCTGGTGTAAAGCCTGGCTGTTCGGGTCACTGCACCAGTTTTGGGATGTATTGTCGTAATGGTGGCAAATGTGTGGAGAAATACAACGGCTATTCCTGCGACTGCACCACCACCGCTTATGATGGGCCTTTCTGTTCAAAAGATGTTGGTGGTTTCTTTGAAGCAGGAACACTGGTTAAGTATAATCTGGTGCCTGAAGTGCTGGCTGCAGCTTCCAGCCTGGATGAAAAGAGCATAATCCACAACCTTCCAGTCGAAACAAACCTGACACATGAAGACCTGACCTTCAGCTTCAGCACCTCCACCTCTCCCAGTCTTCTGGTGTACGTCAGCTCAAAGACCCAGGATTACATGGCTGTGGTGCTCCGTCACAATGGGACCCTGCAGCTGCGGTACAGCTTGGGCGGCCTCAGAGAGCCCTTCACCATTGATATTGACCAGAGGAACTTGGCCAACGGGCAGCCACACACCGTCAACATCTCTCGCGTGGAGAGAGACATAGAAGTACAGTTGGATCATTATCCCGCCGTCACCTACAGCCTGCCCGAAGCCTCAGACACTCAGTTTACCCTGGTCAAGTCACTCTTCCTGGGTAAAGTCTTTGAAACCGGTTACATTGATCCAGTGCTTATAGAAAAATACAACACCCCGGGGTTTGTGGGTTGCCTGTCCAGAGTCCAGTTCAACAGCATCGCTCCTCTGAAAGCGGCACTCAGGTCCCGCGGTTCAGTGTCCGTCTCGCACCAGGGGAAACTGGTGGAATCAAACTGCGGAGCTTCACCCCTCACCATCCCACCCATGTCTGCAGCAACCGATCCATGGCACCTGGATGCAGGTGCTGATTTCCCCTTCAATGAGGAAAGAGTCATACCAGATGGAGTTAACAGAAATTCAGCTATAATAGGAGGCATCATTGCGGTGGTGATCTTCACTATTCTGTGCACTCTGGTGTTTCTGATCCGGTACATGTTTCGCCATAAAGGCACATACCACACCAATGAAGCCAAGGGGGGAGAGTCGTCCGAATCAGCCGACGCCGCCATTATTGGCACCGAGGCCAATTTCACAGAGACCATCGACGAAAGCAAGAAGGAATGGTTCATCTAG

Function

GO:

id name namespace
GO:0071205 protein localization to juxtaparanode region of axon biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120328-3 Predicted to act upstream of or within protein localization to juxtaparanode region of axon. Predicted to be located in membrane and paranodal junction. Predicted to be integral component of membrane. Is expressed in anterior lateral line ganglion and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in several diseases, including Pitt-Hopkins syndrome; autism spectrum disorder (multiple); communication disorder (multiple); cortical dysplasia-focal epilepsy syndrome; and social phobia. Orthologous to human CNTNAP2 (contactin associated protein 2).

Ensembl:

ensembl_id ENSDART00000186112

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047173 lncRNA downstream 7776 17409308 ~ 17413946 (-) True XLOC_023381
TCONS_00046229 lncRNA downstream 7786 17409308 ~ 17413936 (-) False XLOC_023381
TCONS_00046230 lncRNA downstream 7793 17409308 ~ 17413929 (-) False XLOC_023381
TCONS_00046228 lncRNA downstream 15239 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00047172 lncRNA downstream 15326 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046238 lncRNA upstream 264656 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046239 lncRNA upstream 264656 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA upstream 266152 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046243 lncRNA upstream 281140 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046254 lncRNA upstream 380718 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046226 mRNA downstream 21250 17365102 ~ 17400472 (-) False XLOC_023379
TCONS_00046224 mRNA downstream 21579 17364745 ~ 17400143 (-) False XLOC_023379
TCONS_00046225 mRNA downstream 32459 17365102 ~ 17389263 (-) False XLOC_023379
TCONS_00046222 mRNA downstream 354438 17048078 ~ 17067284 (-) True XLOC_023375
TCONS_00046221 mRNA downstream 373804 17041823 ~ 17047918 (-) False XLOC_023375
TCONS_00046237 mRNA upstream 264654 18444189 ~ 18446604 (-) False XLOC_023385
TCONS_00046241 mRNA upstream 268573 18448108 ~ 18467064 (-) False XLOC_023386
TCONS_00046244 mRNA upstream 290231 18469766 ~ 18477672 (-) False XLOC_023387
TCONS_00046246 mRNA upstream 290632 18470167 ~ 18477673 (-) False XLOC_023387
TCONS_00046248 mRNA upstream 306331 18485866 ~ 18510631 (-) True XLOC_023388
TCONS_00046223 other downstream 282608 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046216 other downstream 441994 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 521598 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 866739 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 1346607 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046242 other upstream 273637 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 290631 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 294246 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046255 other upstream 380895 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046256 other upstream 445717 18625252 ~ 18625367 (-) True XLOC_023390

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02389202_02488018.mRNA False 1707 mRNA 0.52 10 CI01000018 2389202 ~ 2488018 (-)