XLOC_023375 (msrb2)


Basic Information

Item Value
gene id XLOC_023375
gene name msrb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17040211 ~ 17067284 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046220
GTTAGTATGTGACGCGATGGGCGGTCAGGTTGAGCAACAGAAGCTTCATGACTTTCTTTGGGAGCTCCACATTAGCGAGCTGAAGTTTGAAGCCTGTTCCAACATCGTTCTCATTGGAAAGATTAAAAAGGGCACATATTTTCACAGAGCATTACTTTTTAAGGTTCTTGCTGACCGAATTGGGCTGAGCTGTAGTCTCATCAGAGGAGAATACAACCGTGCCTGGAATGAAATTCTCATCATGGGTCCGAAGAAAGCTTATGGTTATTCTCAGCCTGAAAGCTATATCATAGACCTCATGCATCAACCTGGAAACCTCATGAAAAGCAACTCACAAGCAGCCCTAATATATCAGTCCATTTAAAGCAGATATTAattttgtttctgtgtgtctATAGGGAAACTGAGAGGGGTGGGATAAATTCAATAATTTGACAATATATAAATTATACTCTGTAAAACAAAAATTGAATTAAATCCAAATAAAGTATTACCTTGATATAAAACTACGTGAGATATAAAATGCTGTGAATTGTGGTCAAGTCAGAGTTGTGATTTATGAAGTTCAAAGTCTACATTGATGAGCCAGAAAACAAGAAACCCCAAAGTCACATAAGTAAAAACTTCGACGTTCGTGAGCGGTTAGTCCATTGACAAAAGGTGCAAAGTTTGATCAGTTTCAGTCGCCAGTCGACCGTGACCCATAAAGCTGTGAGTTGTGACCGGTTTCCGCTGCTCGAGCTGTGAGGGGTGGAATGAAGACAACTGAGCTCAATTCTTTCCAGTCTATTGGGTTGCCCATCTTAACTAATAGTGGAGAAAGTCCCGCCAGTGCATGAAATAGTATGTCGAGAAGCATGTCACGGTTTCTAGTTCGCCTCTCCACTGTCGTTTCCAAAGGAGCGACTGGCAAATCAGTTTTACCTCAGAAGAGGATATTCGCTGGGATTCGATTGATTTCTTCATCTACGGGTTTGCAGTCATTGACACGTTATGACCAGTCCACAGACTGGCAGAGAAAACTATCCCCAGAACAATATGTTGTTACAAGAGAAAAAGGCACAGAGGTGCCGTTCAGTGGCATCTACTTGAATCACAATGAGGTGGGcatgtatcactgtgtttgctgTGACTCGCCTCTTTTTAGCTCAGAAGCAAAATATGACGCAGGAGCTGGCTGGCCGTCATTCTGTGAGGCTCATGGGACTTGGGAAAAAGATGAGAGTCATGCCAACATTGTGCGCCGCCCTGATAACTCACTTGGCAGCACAGGAACTGAGGTCATCTGCAAACATtGTGATGCCCACCTTGGACATGTCTTTGAGGATGGTCCTGATCCGACCGGACAGCGATTCTGCATCAACAGTGTAGCACTGAACTTTAAACCCAGAGAAAAGTAATGCCAACAAATCCAATAGtgcaaataacaaaaacaaatagcaTTGGAATAACAAATGTCCTTAGTTCTGTGCTATGAGTCGTGCCGGTTCACTCCTAAAATGATAACTATAACAATAACTATATTAGCATCCACAACAACAAACATTTGAGTTTATATTGACTGCCCACTTTTTCTGCAACATTGGTTTCCATATTGATTTTTCCCATTGATTTTTCCAATAGGAATTAAGCACACGACACTGTTAAATGTATTTGACTTTTATCATAATACATGATATAATGATATTATCACTGCTGCAAAGAAAGGTTCTTTTAGCATGTACAATTACAAACAGAGCTCTTCATTTTCGGGCATGGCTTAAAGCAGTGTGTCCCAAAGTGAGGGTCGCAAGACAATTTGCTTAACGATTTCCAAAATGGTTGAATGTTAATtatgtaaaatgttaataataaacattaaaaaataacatgcaaaaaaaagtcatcagcctttcgattattattttttttttttgcaacccctggggttATTACGTTATATTAAAGACGTAGCAATTGggttcaacacaggctcattctgattacgaaCCCCTATAAACatatctggagagcaccaaatatgtcccaggagccaCTGCCACTGTGTAAGTGTTTTCagttctcaaatttctcttgcgagtgccattttgcgcctgctcttctcatgtaaatccaccagaggtcgctgttgactggctgaccgaccaaccaaccgaccaatccCCCATCCTCCCCATCTCTAAACTTAACCAATAGTATTGTTAAGAGCTCCTATTGTGACCCGCCCTAAcgacttccctaaacccaactgacaatttTTTGAAagttcagaaaaagaaaacttaaagacctgtaatggatgtgacaaaggagacatgcaaaacatgcagtgttaacatatgaaattatttgtattttaaaataaataacctaataagtCTTGAACTCTACTGTTAATACAAAACTTTGAATGTTCTGAAAAGCCATACAAAtggtttatataataaaataactattcactgtattttaaagtgtgtatgattagggctgcacgatgctggaaaaatctaacattgtgtttttttttcccagcgATACATGTATATATTACGAAATTAATACAATTTTGGTAGATTTCTTTAAATAGCTCTAATTGGAAtggatttatataaataaaaataataattaataaaaacaaaattgagcaaagataaaaataaatttagcagtcagatattcaggtacagtaatatgGTACGATACAATATCAATATATTTTGCCCCCGATTATGATTATTACGAATATTAACCATCCACAATATATCATCATATTCATAAATGAAGGGGTGGATGCATCAAAAATGTAGAAGATGTATTTCATTAACAGCACATATATTTTGTAGAATTGCAACATTGATATGTTTGATCTGACACTATGAGAAGCACCACCTCATGTACAGTCATCTAAGTGGTAAATGGTAGCAGTGCAAGGCTAATGAAATAGTTCAGATCTTTTGTACCTTTACATAAATCCTGATACTTGGCTACATCATTAGTGTACCGGGAGTGGAATAAATCTCAATAAACCAGCATAGATATTTTGTCCTACCCCtaatattgaataatcaaatgtaatgtaaataaacactgtgcattcttcattgctgatcaactataataatCCCAACTTCACATTGAAAATGCTGCGGTGTGATTATGGCGAATgagcacattgcgatatcgatgctgaaacatcATATTGAGCAGCCCTATTCATGAAAACATGTTATGCATGGTCATTATCATGATTTATTGTAGCATTTAATATTGGCACGTCTAATAGGGATCTGCTTATCTGCTTAAgtctttgttgttattattattattaacattttaaccaAACTATCCAGCTATGAGGAGAATCACAGCATTTAAACTTTGAGAAAAAtcagaaaataagaaaataaagaaatatttacaCAAAATTGTTTAACAGCTTATCTGAGAAAAGTAACTACAGTCCCACAACGCATTGATGACATGAATGAcaatttaatgaaaagaaaatgaaataaacattgattAAAAATCACAGTGTGCTGCAGTTTTGTCATTTGATTTTTACATGCTTGAACTCTTTGAAGCAGGGTGGATTCTGATGGTCAATGTGCCTTCATGATCTGGAAAAATCTCAGAAAGTGATTTCAATTATTTCAAGTTGATGTGTCCACAGTACATTGTTGTTATAGTTATCATCTTTGGTTTGAGCGTGCATTTAGTTTACAATATTTACTCTTATCaaatacagacacaaacacacacacacacacacacacgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatatttgcaGGCTGTGTTTGTGAAATGGTTCAATTAAACATCCATCTTGTACCACTTCAAAAAGGTGTAAATATTTAttgcataatatattttatgtttgagTGGCACTgcataagaataaataa
>TCONS_00046221
AAGTTTGATCAGTTTCAGTCGCCAGTCGACCGTGACCCATAAAGCTGTGAGTTGTGACCGGTTTCCGCTGCTCGAGCTGTGAGGGGTGGAATGAAGACAACTGAGCTCAATTCTTTCCAGTCTATTGGGTTGCCCATCTTAACTAATAGTGGAGAAAGTCCCGCCAGTGCATGAAATAGTATGTCGAGAAGCATGTCACGGTTTCTAGTTCGCCTCTCCACTGTCGTTTCCAAAGGAGCGACTGGCAAATCAGTTTTACCTCAGAAGAGGATATTCGCTGGGATTCGATTGATTTCTTCATCTACGGGTTTGCAGTCATTGACACGTTATGACCAGTCCACAGACTGGCAGAGAAAACTATCCCCAGAACAATATGTTGTTACAAGAGAAAAAGGCACAGAGGTGCCGTTCAGTGGCATCTACTTGAATCACAATGAGGTGGGcatgtatcactgtgtttgctgTGACTCGCCTCTTTTTAGCTCAGAAGCAAAATATGACGCAGGAGCTGGCTGGCCGTCATTCTGTGAGGCTCATGGGACTTGGGAAAAAGATGAGAGTCATGCCAACATTGTGCGCCGCCCTGATAACTCACTTGGCAGCACAGGAACTGAGGTCATCTGCAAACATtGTGATGCCCACCTTGGACATGTCTTTGAGGATGGTCCTGATCCGACCGGACAGCGATTCTGCATCAACAGTGTAGCACTGAACTTTAAACCCAGAGAAAAGTAATGCCAACAAATCCAATAGtgcaaataacaaaaacaaatagcaTTGGAATAACAAATGTCCTTAGTTCTGTGCTATGAGTCGTGCCGGTTCACTCCTAAAATGATAACTATAACAATAACTATATTAGCATCCACAACAACAAACATTTGAGTTTATATTGACTGCCCACTTTTTCTGCAACATTGGTTTCCATATTGATTTTTCCCATTGATTTTTCCAATAGGAATTAAGCACACGACACTGTTAAATGTATTTGACTTTTATCATAATACATGATATAATGATATTATCACTGCTGCAAAGAAAGGTTCTTTTAGCATGTACAATTACAAACAGAGCTCTTCATTTTCGGGCATGGCTTAAAGCAGTGTGTCCCAAAGTGAGGGTCGCAAGACAATTTGCTTAACGATTTCCAAAATGGTTGAATGTTAATtatgtaaaatgttaataataaacattaaaaaataacatgcaaaaaaaagtcatcagcctttcgattattattttttttttttgcaacccctggggttATTACGTTATATTAAAGACGTAGCAATTGggttcaacacaggctcattctgattacgaaCCCCTATAAACatatctggagagcaccaaatatgtcccaggagccaCTGCCACTGTGTAAGTGTTTTCagttctcaaatttctcttgcgagtgccattttgcgcctgctcttctcatgtaaatccaccagaggtcgctgttgactggctgaccgaccaaccaaccgaccaatccCCCATCCTCCCCATCTCTAAACTTAACCAATAGTATTGTTAAGAGCTCCTATTGTGACCCGCCCTAAcgacttccctaaacccaactgacaatttTTTGAAagttcagaaaaagaaaacttaaagacctgtaatggatgtgacaaaggagacatgcaaaacatgcagtgttaacatatgaaattatttgtattttaaaataaataacctaataagtCTTGAA
>TCONS_00046222
GCTTAACGTTaaacaatttatattattttttattgttctcATCTTGTTGGAAGATATTCTTTCTTCGTTTCTGATACATTGTACCTTTTGGCATGTAGCTTGCAGTGTTCGTCTTCTAGATGGGGAAAAAAGTCAAAAAAGAGGCTGAGACATGCCCGAAAGATGTGTTCGACCCTTTATCCATCGAAAGCAAAACTGCAACAACAGCAGTTCTGATGCTCAGCTCCCCTGAAGAAGAAGTGCTGGCCAAAGCTTGCGAGGCCATCCACAAATTTGCAGAAAAAGGTGATGAGAATAAGACTTGTTTGATGTGTTTGGGAGCGATTGAACCCCTTTCTCTTCTCATATCTCATGAAGACAAGATTGTGCGCAGgaatgctgtcatggctttgggCGTCATGGCTTCTAACAATGAAGTTAAAAAGCACTTGAAGTGTCTGGATGTGATACCTGCAATAATCAGCAAACTGTCTCCAGAAGAGAATGTTATGGTCCATGAATTTGCCACATTGTGTTTGGCATCATTGTCAGTGGACTTCTCCTACAAGATCCAGATATTTGAAAGCAATGGACTTGAACCTCTTATTCAGCTCTTGTCCAGCCCAGATCCAGATGTGAAGAAAAACTCAGTGGAGTGCATCTTTAATCTAGTGCAAGACGTCCAGAATAGAGCGGCTGTGCAACGTCTGAATGGACTCCCTCCACTTCTGGACCTACTGCGCTCAGAGTTCTCAGTCATTCAGCAACTTGCACTGCACACTATAGAGAAAATCACCACTGACACCGAAACCTGTGTGGCCTTCAGGAATGTACAGGGCTTTGAGAGAATCCTGGAGGTTGTGGCGATGAAAGAGTTTAGTGACCTGCATGAAGGGGCTCTTAGGGTTATCTTGAACTGTCTGGAGGACACTGAGTCCATGCAGCTTTTTCAGACGATGGGGGGCCTGGAACAACTACTGCAGTGTGTTGGCACATCCACAGTGGCTGAAGTGAAGGCAAATGCAGTCAAAGCCATAGCCAAGATGGCACAGAGCAGTGAGAACAGAAAAATTCTGCATGAGCGGAATATAGAAAAAACTCTCACTGACCTTCTCACACAGGAGAACGAAAGTGTACGCACTGCTGTGTGCCAGGCTGTGGCAACAGTGAGCAAAAACCTCTCCAGCAGGGACACATTCAGAAGTCTGGATGGCATCAGACCCATTGTGCAGCTTCTGAACAGTGAAGGAAGTGAATTAAGAATGGCCGCAGCAGAGGCCTTGTCCAGCCTGACCAACAGCAACAATCTCAATGCATATGCTATATATGATGCAGAAGGAGACAGGCTGTTGGTGCGACAGCTGCAAGACAGCTGCACTGGAGCAGCTGTGTATGCGGCAATGGCCTTGACAAACATGGCATCACAGGAGGAGCTGCGGAAAAGCATTCTGGCCCATGAAGCCATGCCAGCATTGGTGGAGCTGCTTCACTCCACTGATAATAACATTCTCATCAGTGCAGTGCAGGCTGTGGCTTCACTGACCTGTGATGCAGAGGCCAGGCAGGAGCTGAGAAATGTTGGAGGGCTATCAGCTTTAGTTCAGCTGCTCAAATCGATCAATGCTGAAATTCGCAGAAATGCTTCCTGGGCAATTAGTGTGTGCGCAAACGACGAAATAACAGCCTCAGAATTGTGTAATGTTGGAGCTCTAGAGATCCTCCAGGAAATCAGCCTGTCATCACATCGTAGCAACAAATTCAGTCAGCTGGCACTTCAGAAGCTTCTGGACAGCAATCTATCATTGAAATATAGTTTGACTGGACACCTGTCATCCAGCGATATTACCACTGATGGCTTCTATGACCCTGGACAGATAAGAGTGGGTCATCAGTTTCCTGTATTAGAGGATATATCAAAACAAGTGGTCAACCAGCATCGAGCCACCATTGCGGTCAATGGAAAACCTCAGAATCAATTTATCCCCAAAGGACCAGAGGAAGGTAAACAAGACAGTCCAACAGATACTACAGCCTCATCTGTTTTAAACGGCAGAAGAAGCAGCAAAACAccaagtaAAACAAAGGGAAAAGGTCACAAAGAGGAAGatgagaaaaagaaagaagaggATGAGTGCAAGCCACACCAGAAGATAATGGTGGAAGAAACATGGAGTTTGCCGTATGATGCTGCATTTCACAACCTTGTCAAAGAGGCTGCAGAATCCATAATGCCACTTAAGGATGAGGTCAAAATGTATACAGCTTTGGCCATGTTAGTATGTGACGCGATGGGCGGTCAGGTTGAGCAACAGAAGCTTCATGACTTTCTTTGGGAGCTCCACATTAGCGAGCTGAAGTTTGAAGCCTGTTCCAACATCGTTCTCATTGGAAAGATTAAAAAGGGCACATATTTTCACAGAGCATTACTTTTTAAGGTTCTTGCTGACCGAATTGGGCTGAGCTGTAGTCTCATCAGAGGAGAATACAACCGTGCCTGGAATGAAATTCTCATCATGGGTCCGAAGAAAGCTTATGGTTATTCTCAGCCTGAAAGCTATATCATAGACCTCATGCATCAACCTGGAAACCTCATGAAAAGCAACTCACAAGCAGCCCTAATATATCAGTCCATTTAAAGCAGATATTAattttgtttctgtgtgtctATAGGGAAACTGAGAGGGGTGGGATAAATTCAATAATTTGACAATATATAAATTATACTCTGTAAAACAAAAATTGAATTAAATCCAAATAAAGTATTACCTTGATATAAAA

Function

symbol description
msrb2 Predicted to enable actin binding activity and peptide-methionine (R)-S-oxide reductase activity. Predicted to be involved in actin filament polymerization. Predicted to act upstream of or within protein repair and response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human MSRB2 (methionine sulfoxide reductase B2).

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030091 protein repair biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0033745 L-methionine-(R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110614-1 Orthologous to human ARMC3 (armadillo repeat containing 3).
ZDB-GENE-040426-2304 Predicted to enable actin binding activity and peptide-methionine (R)-S-oxide reductase activity. Predicted to be involved in actin filament polymerization. Predicted to act upstream of or within protein repair and response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human MSRB2 (methionine sulfoxide reductase B2).

Ensembl:

ensembl_id ENSDARG00000018459 ENSDARG00000074708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046220 False 3997 mRNA 0.36 6 17040211 17049270
TCONS_00046221 False 1720 mRNA 0.41 5 17041823 17047918
TCONS_00046222 True 2757 mRNA 0.44 17 17048078 17067284

Neighbor

gene id symbol gene type direction distance location
XLOC_023374 c8g coding downstream 573 17031129 ~ 17039638 (-)
XLOC_023373 ptgdsb.1 coding downstream 10837 17027310 ~ 17029374 (-)
XLOC_023372 ptgdsb.2 coding downstream 16819 17021513 ~ 17023392 (-)
XLOC_023371 klhl15 coding downstream 59874 16962969 ~ 16980337 (-)
XLOC_023370 cmbl coding downstream 123125 16912248 ~ 16917086 (-)
XLOC_023376 NA coding upstream 57126 17124410 ~ 17126986 (-)
XLOC_023377 CR376737.1 coding upstream 69465 17136749 ~ 17139114 (-)
XLOC_023378 NA coding upstream 166242 17233526 ~ 17236200 (-)
XLOC_023379 cul1b coding upstream 297461 17364745 ~ 17400472 (-)
XLOC_023380 NA coding upstream 336186 17403470 ~ 17406483 (-)
XLOC_023665 dre-mir-735 misc upstream 21110677 38177961 ~ 38178027 (-)
XLOC_023368 CR354550.1 non-coding downstream 485228 16554869 ~ 16554983 (-)
XLOC_023367 NA non-coding downstream 817425 16204788 ~ 16222786 (-)
XLOC_023366 NA non-coding downstream 892693 16146503 ~ 16147518 (-)
XLOC_023365 CU207257.1 non-coding downstream 965096 16074089 ~ 16075115 (-)
XLOC_023364 NA non-coding downstream 1290797 15745070 ~ 15749414 (-)
XLOC_023381 NA non-coding upstream 342024 17409308 ~ 17413946 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_02138741_02148435 ARMC3 coding CI01000018 null 2138644 ~ 2148435 (-)