XLOC_023373 (ptgdsb.1)


Basic Information

Item Value
gene id XLOC_023373
gene name ptgdsb.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17027310 ~ 17029374 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046218
CTCCACACACCAGACTCTGCCTTGTGAACTGCAAACAGAGAGAGAAGCAACACTTCTGCAAACATGACGAGTGTCGTAGTAAAGATGCTGTGCCTTCTGCTCTGCGCAGTTTTCGCCTCGGCTGATGTCATGCCCATGACTGACTTCGACCTGCAAAAGGTGGAAGGAAAGTGGTATCTCGTTGGCTTTGCTACAAACGCAAAATGGTTTGTCAGTCATAAGGATGACATGAAGATGGGAACTGCCATGCTGGTGCCCACCCAGGAGGGAGACCTTGACCTCAGTTACTCTAACCTGAAGAGTGATGGTTCCTGCTGGAGGATGACTTACCTCGCCAAGAAAACCGAGACTCCTGGAAGATTTGTCTTCTACAGCCAGCgttGGGGAAATGACAATGACATGCGCGTGGTTGACGCCAAGTTTGACGAGTACGCAATTTTTCACACCATCAAGACCAAAGGAGGAGTATCTGAGATCCTCAACAAACTCTACAGTCGCACTCCAGAAATGGTCGATGACTTGAAGGAGAAGTTCAGGCAGTTTTGTTTGGACACTGGCATCCTTGAGGAAAACATTGTCATGCTTCCACAAAATGGAGAATGCTCAGTTGCCGCATAATCGCCTCATCAAGCGAAGACAAAGACAGCTTCAGCTGGTCCAATCATTTCAGCCAAAAACAGATCTGAATTTACTGTCGGCTTGGTTTTGGTCTCTTTCACTTTGTATGGAAACATTCTTTGTGCCTTGAACAGTCATGGTGTGCTCATACTGATTGACCAGTTTGCAACTACAGAGTAATCAAAAGCAGAGGGGAGAGAATGGCAAAGCATTTCCTTACCAAAAAGATGTTTTTTGAACTCAAGTTTTTCATGTTCTAGACCGATGTGTCATGTTTTTAAGTGCCAATGTTAGCTAACATGTCTGATCACCCATTTCACACACCACCTGCAGGACTTTTATAAGCTGTGCTTTTTATCTTTGATGGTTTTGTTTACTGCTGATTGATTAAATTGGTTTACAAAAGTCTAA

Function

symbol description
ptgdsb.1 Enables retinoic acid binding activity. Predicted to be located in extracellular region. Is expressed in eye; female organism; male organism; postcranial axial skeleton; and reproductive system. Human ortholog(s) of this gene implicated in carotid artery disease; intrahepatic cholangiocarcinoma; and urinary tract infection. Orthologous to several human genes including PTGDS (prostaglandin D2 synthase).

GO:

id name namespace
GO:0001972 retinoic acid binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8436 Enables retinoic acid binding activity. Predicted to be located in extracellular region. Is expressed in eye; female organism; male organism; postcranial axial skeleton; and reproductive system. Human ortholog(s) of this gene implicated in carotid artery disease; intrahepatic cholangiocarcinoma; and urinary tract infection. Orthologous to several human genes including PTGDS (prostaglandin D2 synthase).

Ensembl:

ensembl_id ENSDARG00000027088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046218 True 1029 mRNA 0.45 6 17027310 17029374

Neighbor

gene id symbol gene type direction distance location
XLOC_023372 ptgdsb.2 coding downstream 3918 17021513 ~ 17023392 (-)
XLOC_023371 klhl15 coding downstream 46973 16962969 ~ 16980337 (-)
XLOC_023370 cmbl coding downstream 110224 16912248 ~ 16917086 (-)
XLOC_023369 mtrr coding downstream 122292 16851213 ~ 16905018 (-)
XLOC_023368 CR354550.1 coding downstream 472327 16554869 ~ 16554983 (-)
XLOC_023374 c8g coding upstream 1755 17031129 ~ 17039638 (-)
XLOC_023375 msrb2 coding upstream 10837 17040211 ~ 17067284 (-)
XLOC_023376 NA coding upstream 95036 17124410 ~ 17126986 (-)
XLOC_023377 CR376737.1 coding upstream 107375 17136749 ~ 17139114 (-)
XLOC_023378 NA coding upstream 204152 17233526 ~ 17236200 (-)
XLOC_023665 dre-mir-735 misc upstream 21148587 38177961 ~ 38178027 (-)
XLOC_023367 NA non-coding downstream 804524 16204788 ~ 16222786 (-)
XLOC_023366 NA non-coding downstream 879792 16146503 ~ 16147518 (-)
XLOC_023365 CU207257.1 non-coding downstream 952195 16074089 ~ 16075115 (-)
XLOC_023364 NA non-coding downstream 1277896 15745070 ~ 15749414 (-)
XLOC_023380 NA non-coding upstream 374096 17403470 ~ 17406483 (-)
XLOC_023381 NA non-coding upstream 379934 17409308 ~ 17413946 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000315_01668475_01671166 NA coding CI01000315 null 1668475 ~ 1671562 (+)