XLOC_023372 (ptgdsb.2)


Basic Information

Item Value
gene id XLOC_023372
gene name ptgdsb.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17021513 ~ 17023392 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046217
ACACACCCGACTCTGCCTTGTGAACTGCAAACAGAGAGAGAAGCAACACTTCTGCAAACATGACGAGTGTCGTAGTAAAGATGCTGTGCCTTCTGCTCTGCGCAGTTTTCGCCTCGGCTGATGTCATGCCCATGACTGACTTCGACCTGCAAAAGGTGGAAGGAAAGTGGTATCTCGTTGGCTTTGCTACAAACGCAAAATGGTTTGCAAGTAAAAAGGTTGACATGAAGATGGGAACTGCCATGCTGGTGCCCACCGAAGAGGGAGACCTTGAACTCAATTGCTATAAACCAAAGAGTGATGGTACCTGCTGGAAAATGACGAACCTCGCCAAGAAAACCGAGACTCCTGGAAGATTTGTCTTCTACAGCCAGCGTTGGAAAAATGACAATGATTTGCGCGTGGTTGATGCCACATTTGACAAGTACGCTGTTATTCATGTCATCAAAACCAAAGCAGGAGAATCTGATGTCCTCAACAAACTCCTCAGTCGCACTCCAGAAATTGCTGATGACTTGAAGGAGAAGTTCAGGCAGTTCTGTCGGGACACTGGCATTCTTGATGAAAACATTCTCATACTTCCACCAGGCGGAGAATGCTCAGTTGCCGCATAATCACCTCATCAAGCGAAGACAAAGACAGCTTCAGCCGGTCCACTCATTTCAGACAAAAACAGATCTGAATTTACTGTCGGCTTGGTTTTGGTCTCTTTCACTTTGTATGAAAACATTCTTTGTGCCTTGAACAGTCATGGTGTGCTCATATTGATTGACCAGTTTGCAACTACAGAGTAATCAAAAGCAGAGGTGAGAGAAGTATTTCCTTACCAAAACTCAGTTTTTCATGTTCTAGACCATAAGTGCCAATGCTAGCTAACAAGTCTGATCACCATTATGGCACACCACCTGTAAGACTTTTATAAGCTGTttcatttgattagattttttagaATTTACGGTCGGCTTGGTTTTGGTCTCTTTcacattatattgtttttatttgtgccTTAAACAGTCTGCACAATCTCAAGCAAAGGGAAGAGAATCACAAAGTATTTTTTACACCAAAATGATGCGTTTTTAACTCAATTCTTAATGATGTATCATGTTTAGAGGTGCCACTGTTGGCTAACATGTCTGATCACCATTATGGCACACCACCTGTAAGAATAACTTCTTTTTTCTCTTTGTTGGTTTTGTTTGCTGCCGATGGATTAAATAGGTTGGCAAAAAActaa

Function

symbol description
ptgdsb.2 Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Is expressed in midbrain neural keel; neural plate; neural tube; segmental plate; and somite. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human PTGDS (prostaglandin D2 synthase).

GO:

id name namespace
GO:0036094 small molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030911-3 Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Is expressed in midbrain neural keel; neural plate; neural tube; segmental plate; and somite. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human PTGDS (prostaglandin D2 synthase).

Ensembl:

ensembl_id ENSDARG00000071626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046217 True 1237 mRNA 0.42 6 17021513 17023392

Neighbor

gene id symbol gene type direction distance location
XLOC_023371 klhl15 coding downstream 41176 16962969 ~ 16980337 (-)
XLOC_023370 cmbl coding downstream 104427 16912248 ~ 16917086 (-)
XLOC_023369 mtrr coding downstream 116495 16851213 ~ 16905018 (-)
XLOC_023368 CR354550.1 coding downstream 466530 16554869 ~ 16554983 (-)
XLOC_023367 NA coding downstream 798727 16204788 ~ 16222786 (-)
XLOC_023373 ptgdsb.1 coding upstream 3918 17027310 ~ 17029374 (-)
XLOC_023374 c8g coding upstream 7737 17031129 ~ 17039638 (-)
XLOC_023375 msrb2 coding upstream 16819 17040211 ~ 17067284 (-)
XLOC_023376 NA coding upstream 101018 17124410 ~ 17126986 (-)
XLOC_023377 CR376737.1 coding upstream 113357 17136749 ~ 17139114 (-)
XLOC_023665 dre-mir-735 misc upstream 21154569 38177961 ~ 38178027 (-)
XLOC_023366 NA non-coding downstream 873995 16146503 ~ 16147518 (-)
XLOC_023365 CU207257.1 non-coding downstream 946398 16074089 ~ 16075115 (-)
XLOC_023364 NA non-coding downstream 1272099 15745070 ~ 15749414 (-)
XLOC_023378 NA non-coding upstream 210134 17233526 ~ 17236200 (-)
XLOC_023380 NA non-coding upstream 380078 17403470 ~ 17406483 (-)
XLOC_023381 NA non-coding upstream 385916 17409308 ~ 17413946 (-)

Expression


Co-expression Network