CI01000018_02138741_02148435 (ARMC3)


Basic Information

Item Value
gene id CI01000018_02138741_02148435
gene name ARMC3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2138644 ~ 2148435 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_02138741_02148435.mRNA
TGCTTTCTTGAAATATTTTCAACCGAAGTATTATTCCTTCAGTTCGACCCTCTACCTATCGAGAGCAAAACAGCAGCGACAGCGGTTCTCATGCTCAGCTCTCCTGAAGAAGAGGTGCTGGCAAAAGCTTGTGAAGCCATCCACAAATTCGCGGAAAAAGGTGATGAGAATAAGACTTCTTTGATGTGCTTGGGAGCGATTGAACCTCTTTCTCGTCTCATTTCTCACGAGGACAAGACTGTGCGCAGGAATGCTGTCATGGCTCTGGGCGTCATGGCTTCTAATAATGAAGTTAAAAAGTGTTTGAAGACACTGGATGTGATACCTGCAGTCATCAGCAAACTGTCACCTGAAGAGAATATTGTGGTCCATGAGTTTGCCACTTTGTGTTTGACGTCATTGTCAGTGGACTTCTCCTACAAGATCCAGATATTTGACCACAAAGGACTTGAACCTCTTATTCAGCTCTTGTCTAGCCCGGATCCTGATGTAAAGAAAAATTCTGTGGAGTGCATATTTAATCTTGTTCAAGACATTCAGAATCGAGCGGCTGTGCAGCGTCTAAATGGACTCCCCCCACTTCTGGATCTGCTGCGCTCAGAGTTCCCAGTTATTCAGCAGCTTGCACTGTGCACCATAGAGAACATCACCACTGACAGCGAAACCCGTGTGGCCTTTAGAAATGTACAGGGCTTTGACAGAATCCTGGAGCTTCTTGCGACCAAAGAGTTTAGTGAACTGCATGAGGGGGCTCTCAGGGTTATCTGTAACTGTCTGGAAGACAGCGAGGCCATGCAGCTTATTCAGACGATGGGTGGCTTGGAACAGATACTGCAATTTGTTGGCACATCCACACTGCCTGAAGCGCAGGCTAATGCAGCCAAGGCCATAGCCAGGATGGCACAGAGCAGTGAGAACAGAAAAATTCTACATGAACGGAATGTAGAAAAAGCCCTCACGGATCTTCTCATGCAGGAGAATGAGAGTGTGCGCACTGCTGCATGCCAGGCTGTGGCAGCAGTGAGCAAAAACCTTTCCAGCAGGGACACATTCAGATGCCTGGATGCGATCGGGCCCATTGTGCAGCTGCTGAACAGTGAAGGAAGTGAGTTGAGAGCGGCCGCCGCAGAGGCCCTGTCCAGCCTGACCAACAGCAACAATCTCAATGCTTATGCTATATATGATGCAGGGGGTGATGAGCTCTTGGTGCAACAGCTGCGAGACAGCTGCACGGGAGCAGCTGTGTATGCAGCATCGGTCTTGACAAACATGGCATCGCAAGAGGAGCTGCGCAGAAGCATTCTGGCCCATGAAGCTATGCCAGCATTGGTGGAGCTGCTACACTCCACTGACAACAACACACTCATCAGTGCAATGCAGGCTGTGGCTTCATTGGCCTGTGATGCAGAGGCCAGGCTAGAGCTGAGAAACGTTGGAGGCCTGTCACCTTTAGTTCAGCTGCTCAAATCAATTCATGCTGAAATTCGGAGAAATGCTTGCTGGGCAATTAGTGTGTGTGCAAACGATGAAATAACAGCCCTAGAATTGTGCAATGCTGGAGCTCTAGAGATACTCCAGGAAATCAACCTGTCACCACACCGTAACAACAAATTTAGTGAGCTGGCACTACAGAAGCTTCTGGACAGCAATCTATCATTGAAGTATAGTCTGACAGGACACCTATCAGCCAGCGATATAACCACTGATGGCTTCTACGACCCTGGACAGATAAGAATGGGTCATCAGGTTCCTACCTTAGAGGATATATCAAAACAAGTTGTCAACCAACATCGAGCCACTATTGCGGTTAATGGGAAGCCCCCGGATCAATCTATTACCAAGGAACCAGATGATCGTAAGTCAGACAGTCCAACAGAAACTACCGCCTCATCTGTTATGAGCAGCAAAAGGAGCAGCAAAACACCAAGTAAAATGAAGGGAAAGGGTCAAAAAGAGGATGAGAAAAAGAAGGATGAGGATGAGAGTAAGCCACAGCAGGAGATGGTGGTGGATGAAGCATGGAGCTTGCCGTATGACGCTGCGTTTCATAACCTTCTCAAAGAGGCTGCCGAATCCATCTCGCCACTTCAGGATGAGGTCAAAATGTATACGGCTTTGGCCATGTTAGTGAGCGAGGCAATGGGTGGCCAGGTTGAGCCAGAGAAGCTGCATGACTTCCTGTGGGAACTGCACATTAGCGAGCTGAAGTTTGAAGCCTGTTCCAACATCATTCTCATTGGAAAGATAAAAAAGGGCACCTACGTTCACAGAGCATTGCTTTTTAAGGTTCTTGCAGACCGAATTGGGCTGAGCTGCAGTCTCATAAGAGGAGAATACAACCACGCCTGGAACGAAATCCTCATCACCGGTCCAAAGAAACGTTATGGATACTCTCAGCCTGAAATCTATATTATAGATCTCATGCACCAACCTGGAAACCTTATGAAAAGCAACTCACCAGCAGCTTTAGCATATCAGACCATTTAATATGTCAGCAAAGTGGTTAAGGCATCATTTATCATTTTAAGGCATATTTTATTTATTATATAACCTGTAAAAGTGAAGTGAATTAAATCCCAATAAA

Function

symbol description
armc3 Orthologous to human ARMC3 (armadillo repeat containing 3).

NR:

description
Armadillo repeat-containing protein 3

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_02138741_02148435.mRNA True 2584 mRNA 0.47 16 2138644 2148435

Neighbor

gene id symbol gene type direction distance location
CI01000018_02135812_02137218 MSRB2 coding downstream 1426 2135750 ~ 2137218 (-)
CI01000018_02129101_02134686 C8G coding downstream 3958 2128393 ~ 2134686 (-)
CI01000018_02125709_02126759 PTGDSB.1 coding downstream 11827 2125110 ~ 2126817 (-)
CI01000018_02080382_02098031 KLHL15 coding downstream 40342 2080332 ~ 2098302 (-)
CI01000018_02069280_02070789 MTRR coding downstream 67413 2069280 ~ 2071231 (-)
CI01000018_02195642_02198053 SKIDA1 coding upstream 45746 2193361 ~ 2199400 (-)
CI01000018_02282563_02282856 NA coding upstream 134119 2282554 ~ 2283072 (-)
CI01000018_02356445_02369996 CUL1B, CUL1A, MGC114992, CUL1.L, CUL1 coding upstream 207491 2355926 ~ 2370015 (-)
CI01000018_02381118_02382741 NA coding upstream 232463 2380898 ~ 2382749 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A coding upstream 240767 2389201 ~ 2488018 (-)
G103867 NA non-coding downstream 22221 2115946 ~ 2116423 (-)
G103892 NA non-coding downstream 112532 2025886 ~ 2026112 (-)
G103889 NA non-coding downstream 116040 2022286 ~ 2022604 (-)
G103885 NA non-coding downstream 134037 2004342 ~ 2004607 (-)
G103855 NA non-coding downstream 152561 1985871 ~ 1986083 (-)
G103929 NA non-coding upstream 52187 2200622 ~ 2200950 (-)
G103931 NA non-coding upstream 54775 2203210 ~ 2203567 (-)
G103939 NA non-coding upstream 88424 2236859 ~ 2239022 (-)
G103944 NA non-coding upstream 116777 2265212 ~ 2265446 (-)
G103961 NA non-coding upstream 151376 2299811 ~ 2302001 (-)
G103842 NA other downstream 178586 1959497 ~ 1960058 (-)
G104968 NA other upstream 1333669 3482104 ~ 3500514 (-)
G105104 NA other upstream 1859262 4007697 ~ 4017817 (-)
G105200 NA other upstream 2095032 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 2706646 4855081 ~ 4876532 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023375 msrb2 coding NC_007135.7 CM002908.2 17040211 ~ 17067284 (-)