CI01000018_02069280_02070789 (MTRR)


Basic Information

Item Value
gene id CI01000018_02069280_02070789
gene name MTRR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2069280 ~ 2071231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_02069280_02070789.mRNA
AAAACCAGGTTTGAGGTATCCAGACTGATACATTTATTATTTTATTTTATACTTAATTTTATTTTACCCATCTAAATTGTAATAGTTTATTAAAAAATATTTATAAATGTTTTATAAAAACAAATAACAATTTAGATTTGTATAAATAACATCATATTTTGTTTGTTAAATTATGTTTTATAAAATAAAAAAAATACATTTTTATTGCTTCGCTCTCAGAAAAAAAGGTACAAAAGCTGTCACTGAGACGAACTCTTTCAAAAGGTTCTAATATGTACCATTTAGGTAATAATATGCACACTTTAGGGTTAAATAAGGTATAAAGGTGTACATTTTGAAAGGGTACTGCCCCAGTGACAGCTTTTGTACCTTTTTCTGAGAGTGCTATCACAACATGTAGAAATGATGAACATCTTAACTCCCTTTGTCCAGCTATGATAATATGCCGTGTGAAGTTGCTGCTCACTTCTTGATACTGTATGGATCTCAGCGCGGTCAGGCTCAGTCAATAGCTGAAGAGATCTGCGAACAAGCTGCTGATCATGGATTTACAGCTGACATCAGCTGTCTGAGCAACCAGGACAAATACAACGTGGACAGTGAAATCCGCCCAGTTGTTTTTGTGGTTTCCACAACTGGTGATGGTGACCCTCCAGACACTGCTCAGAAGTTTGTGAGAAAGATCAAGAATAAAACTCTGCCGCACGACCACCTCTCCCATCTGCGTTATGCACTGTTAGCTCTGGGAGACACAAACTATGCAAATTTCTGCAACGGGGGCAAGACCATTGACAGCCGTCTGCAGCAACTTGGTGCTAAACATTTCTATGCCACTGGGCATGCAGATGACGGCACCGGACTTGAAGTAGTGGTGGATCCTTGGATTGAGGGACTCTGGGACGCTCTGAAAAAAACATTTTCAAGCATGTCTGCTTCGGATCAACAGGGCCCTGCCTGTAGTGACTGTACACAGGACAATAAACATAAAAATGCATTAGGCCAGGAAAATAACAAGGCAGATCTAGAAGTTGATCTTCATCTTTTAAAGCTGAGTGAAGTAGACTCACAAAATGGGAAAACGGTTACATCTGACAGCAGTGTTGCAGAGACTCGCTCTACTACATTGGTTGCATCTCTGAAGCAATCTGTATCACCGTTGTCAGAGTCTGTTCTTAAAGTTCCCGCACTCCCCCCTTCATATCTAGAGGTCGTTTTGGAGGAGGCGTCAACTGAAGGGGACACAGTCCCATGTGGTGAAGACGGTTATCGTGAAGTGTCCATTTCAAAAGCCGTTCAATTAACTCAAGATGATGCAGTGAAATCTGCCATCTTACTGGAGCTTGATATTTCG

Function

symbol description
mtrr Predicted to enable FMN binding activity; [methionine synthase] reductase activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in homocysteine metabolic process and methionine biosynthetic process. Predicted to be active in cytosol. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in several diseases, including endocrine gland cancer (multiple); heart disease (multiple); hematologic cancer (multiple); homocystinuria; and homocystinuria-megaloblastic anemia cblE type. Orthologous to human MTRR (5-methyltetrahydrofolate-homocysteine methyltransferase reductase).

GO:

id name namespace
GO:0010181 FMN binding molecular_function

KEGG:

id description
K00597 MTRR; methionine synthase reductase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_02069280_02070789.mRNA True 1351 mRNA 0.40 5 2069280 2071231

Neighbor

gene id symbol gene type direction distance location
CI01000018_01707576_01707950 NA coding downstream 360900 1707060 ~ 1708380 (-)
CI01000018_01583609_01585366 CBLN2A, CBLN2, CBLN2B coding downstream 483111 1582910 ~ 1586169 (-)
CI01000018_01307800_01363530 RTTN coding downstream 705347 1306982 ~ 1363933 (-)
CI01000018_01286376_01296170 NA coding downstream 773110 1285588 ~ 1296170 (-)
CI01000018_01030816_01076302 JPH1A coding downstream 992978 1029837 ~ 1076302 (-)
CI01000018_02080382_02098031 KLHL15 coding upstream 9101 2080332 ~ 2098302 (-)
CI01000018_02125709_02126759 PTGDSB.1 coding upstream 53879 2125110 ~ 2126817 (-)
CI01000018_02129101_02134686 C8G coding upstream 57162 2128393 ~ 2134686 (-)
CI01000018_02135812_02137218 MSRB2 coding upstream 64519 2135750 ~ 2137218 (-)
CI01000018_02138741_02148435 ARMC3 coding upstream 67413 2138644 ~ 2148435 (-)
G103892 NA non-coding downstream 43168 2025886 ~ 2026112 (-)
G103889 NA non-coding downstream 46676 2022286 ~ 2022604 (-)
G103885 NA non-coding downstream 64673 2004342 ~ 2004607 (-)
G103855 NA non-coding downstream 83197 1985871 ~ 1986083 (-)
G103847 NA non-coding downstream 83545 1969251 ~ 1985735 (-)
CI01000018_02195642_02198053 SKIDA1 non-coding upstream 41409 2193361 ~ 2199400 (-)
G103867 NA non-coding upstream 44715 2115946 ~ 2116423 (-)
G103929 NA non-coding upstream 129391 2200622 ~ 2200950 (-)
G103931 NA non-coding upstream 131979 2203210 ~ 2203567 (-)
G103939 NA non-coding upstream 165628 2236859 ~ 2239022 (-)
G103842 NA other downstream 109222 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 314977 2389201 ~ 2488018 (-)
G104968 NA other upstream 1410873 3482104 ~ 3500514 (-)
G105104 NA other upstream 1936466 4007697 ~ 4017817 (-)
G105200 NA other upstream 2172236 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 2783850 4855081 ~ 4876532 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location