CI01000018_02080382_02098031 (KLHL15)


Basic Information

Item Value
gene id CI01000018_02080382_02098031
gene name KLHL15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2080332 ~ 2098302 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_02080382_02098031.mRNA
ATTTTCAATGTGCAAGCAGAGATATTTTGTTATAGTATTCCATTATCTTCTACCTCTATTTATTCCTCAAGTAATCGTTTCCTGTTTGCACACTGTGGGACATTCAGTTGTTGGTGCATCTTTAGCATTTCTGTCTGTTGGTAATTTTCACATAATTTTAATGATTGGGGCTTGTTCGATTTGTCATTTGTCAGGTGAATATCTTCAGAATTTAATTTCCTAAGGACACAGAGGTACTGTCCTCTGATTGGCTCGGACACCCCCCTGTGACATGCCCGTGGCCAATCAGAGGTGCCTAATGGCGGGGGATGTGGAGGTGTACCTTTCCCAAGTGCATGACGGCAGCGTGTCGTCGGGCTTCCGAGCATTGTATGAGGAGCGACTGCTGCTCGATGTCACTCTGCTCATCGAGGAGCACCACTTCCAGGCGCACAAGGCTCTGTTAGCAACGCAAAGCGATTATTTCCGGGTCATGTTTACGGCCGATATGCGGGAACGTGACCAGGATAAGATTCACATGAAGGGGCTGACGGCAGCCGGGTTTGGTCACGTCCTTCGCTTCATGTATTATGGTTCATTGGAGTTAAGCATGCTCACGGTGCAAGAGATCCTGCAGGCTGCCATGTACGTACAACTCACAGAGGCTGTAGAGTTCTGCTGCTCCTTCCTGCTGGCCAAGATCTGCTTGGAGAACTGTGCTGAGGTCATGCGCTTGCTGGAAGACTTCAGCGTCGGTGTGGAAGGCGTGCAGGAGCAGCTTGATGCGTTTCTGCTGGAGAACTTTGTGCCCCTGATGGGGCGACCGGACTTCCTGTCCTATTTGAGTTTGGAGAAGTTGATGGCATATCTGGATAGTGACCAGCTGAGTCGATTTCCGGAAATTGAGCTGTATGAGGCGGTGCAGGCTTGGCTGAGACATGACCGGCGACGATGGAGACATACGGATGCGGTGGTGCAGAACCTGCGCTTTTGCCTCATGACTCCTGCCAATATCTTTGAGAAGGTAAAGACATCAGAGTTCTACCGTTATTCCCGCCAACTGAGACTAGAAGTTGACCAGGCGCTCAGCTACTTCCATCAGGTGAACGAACAACCGCTGGCGGAAACCAAGTCCAACCGCATCAGATCCGTGAGACCCCAGACTGCTGTATTCCGTGGAATGATCGGCCACAGCATGGTCAATAGTAAGATCCTCCTCCTGCACCGGCCCAAAGTGTGGTGGGAACTAGAAGGCCCCCAGGTACCGCTTCGCCCCGATTGCCTAGCCATCGTCAACAACTTTGCTTTCCTGTTGGGTGGTGAAGAGTTAGGTCCTGACGGAGAGTTCCACGCTTCTTCTAAGGTCTACCGCTACGATCCCAGACAGAACTCCTGGCTACGCATGGCCGACATGTCCGTTCCCAGATCAGAGTTTGCCGTCGGCGTCATCGGGAAGTACATTTACGCCGTTGCAGGCCGCACTCGCGATGAGACGTTTTATTCAACGGAGCGATATGACATTGTTGAGGACAAGTGGGAGTTTGTAGACCCTTACCCTGTAAACAAGTACGGCCACGAAGGCACTGTGCTCAACGGGAAGCTATACATCACTGGCGGCATCACCTCCTCTTCCACCTCAAAACAAGTGTGCGTATTTGACCCCGGACGGGAAGGAACGTCCGAACATCGTACGCGGCGCACACCAATCCTCACCAACTGCTGGGAGAACAAGTCAAAAATGAACTACGCTCGTTGCTTCCATAAGATGATCTCCCACAATGGGAAGCTGTACGTCTTCGGCGGGGTGTGTGTGATACTGCGTGCCTCTTTCGAATCCCAGGGCTGCCCTTCAACAGAAGTATATGACCCAGAGACTGATGAGTGGACTATTTTGGCCTCTATGCCTATAGGACGCAGTGGGCACGGAGTGGCAGTGTTGGACAAACAGATCATGGTGCTCGGGGGACTTTGCTACAACGGTCATTACAGCGACTCTATCCTCACATTTGACCCTGAGGAGAACAAATGGAAAGAGGACGAGTATCCCAGGATGCCTTGCAAACTGGATGGACTGCAAGTGTGTAGTTTGCACTTCCCAGAATACGTTCTGGAACACATGGCAAATGAAGCAAAGCCCTGTCCATGTGATATTGGGGATAAGATTGAATATGGGGGTCTTGGAGAGGAAGTTCAAATCGAGCACATTAAAGCTTATGTGGTGAAGCCTCAAGCATCAGAGAAGGCCATTATTGTAATTCAAGATATTTTTGGATGGCAGCTTCCAAACACCAGATACATGGCTGACATGCTCTCAGCAAATGGATACATTGCAATATGTCCAGATTTCTTTGTCGGAAAAGAGCCGTGGAGCTCATCTCACGACTGGTCAACATTTCAGCAGTGGCTTGAGGACAAAAAGCCTACAGACATAAAAAAGGAAGTGGATGTTGTATTGACGTACCTTAAGGAGAAGTGTGGTGCAAAGCATATAGGTGTTGTGGGTTTCTGTTGGGGTGGTGTTGCCACACACTACATTGCTCTTCAGTATCAAGAAATTAAAGCTGGTGTCTCGGTCTATGGTATCGTTAGAGAGCGGGAAGACAGGTTTGATCTCAAGAGTCCAACCCTCTTCATATTTGCAGAAAAAGATTCAGTCATTCCACTTGATCAGGTGACCATATTAGAGACAAGACTGAAGGAAAAGTGCACTGCTGACTTCCAAGTGAAAATCTTCCCTAATCAGACACATGGGTTTGTCCATCGCAAGAGGGAAGACATTAACCCAGACGATAAACCCTACATACAGGAAGCCAGGAAAGATATGATCAACTGGTTAAATAAGTACATGTAAACTTCAACAGGTTAAATGACTGAGGAGAAGGTTAAACACTCTGTAATGAA

Function

symbol description
klhl15 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 103. Orthologous to human KLHL15 (kelch like family member 15).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10452 KLHL15; kelch-like protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_02080382_02098031.mRNA True 2880 mRNA 0.49 8 2080332 2098302

Neighbor

gene id symbol gene type direction distance location
CI01000018_02069280_02070789 MTRR coding downstream 9101 2069280 ~ 2071231 (-)
CI01000018_01707576_01707950 NA coding downstream 371952 1707060 ~ 1708380 (-)
CI01000018_01583609_01585366 CBLN2A, CBLN2, CBLN2B coding downstream 494163 1582910 ~ 1586169 (-)
CI01000018_01307800_01363530 RTTN coding downstream 716399 1306982 ~ 1363933 (-)
CI01000018_01286376_01296170 NA coding downstream 784162 1285588 ~ 1296170 (-)
CI01000018_02125709_02126759 PTGDSB.1 coding upstream 26808 2125110 ~ 2126817 (-)
CI01000018_02129101_02134686 C8G coding upstream 30091 2128393 ~ 2134686 (-)
CI01000018_02135812_02137218 MSRB2 coding upstream 37448 2135750 ~ 2137218 (-)
CI01000018_02138741_02148435 ARMC3 coding upstream 40342 2138644 ~ 2148435 (-)
CI01000018_02195642_02198053 SKIDA1 coding upstream 95879 2193361 ~ 2199400 (-)
G103892 NA non-coding downstream 54220 2025886 ~ 2026112 (-)
G103889 NA non-coding downstream 57728 2022286 ~ 2022604 (-)
G103885 NA non-coding downstream 75725 2004342 ~ 2004607 (-)
G103855 NA non-coding downstream 94249 1985871 ~ 1986083 (-)
G103847 NA non-coding downstream 94597 1969251 ~ 1985735 (-)
G103867 NA non-coding upstream 17644 2115946 ~ 2116423 (-)
G103929 NA non-coding upstream 102320 2200622 ~ 2200950 (-)
G103931 NA non-coding upstream 104908 2203210 ~ 2203567 (-)
G103939 NA non-coding upstream 138557 2236859 ~ 2239022 (-)
G103842 NA other downstream 120274 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 287906 2389201 ~ 2488018 (-)
G104968 NA other upstream 1383802 3482104 ~ 3500514 (-)
G105104 NA other upstream 1909395 4007697 ~ 4017817 (-)
G105200 NA other upstream 2145165 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 2756779 4855081 ~ 4876532 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016456 klhl15,LOC107727232 coding CM030122.1 CM030122.1 20350648 ~ 20353506 (+)