RNA id: CI01000018_02138741_02148435.mRNA


Basic Information

Item Value
RNA id CI01000018_02138741_02148435.mRNA
length 2584
RNA type mRNA
GC content 0.47
exon number 16
gene id CI01000018_02138741_02148435
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2138644 ~ 2148435 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTTTCTTGAAATATTTTCAACCGAAGTATTATTCCTTCAGTTCGACCCTCTACCTATCGAGAGCAAAACAGCAGCGACAGCGGTTCTCATGCTCAGCTCTCCTGAAGAAGAGGTGCTGGCAAAAGCTTGTGAAGCCATCCACAAATTCGCGGAAAAAGGTGATGAGAATAAGACTTCTTTGATGTGCTTGGGAGCGATTGAACCTCTTTCTCGTCTCATTTCTCACGAGGACAAGACTGTGCGCAGGAATGCTGTCATGGCTCTGGGCGTCATGGCTTCTAATAATGAAGTTAAAAAGTGTTTGAAGACACTGGATGTGATACCTGCAGTCATCAGCAAACTGTCACCTGAAGAGAATATTGTGGTCCATGAGTTTGCCACTTTGTGTTTGACGTCATTGTCAGTGGACTTCTCCTACAAGATCCAGATATTTGACCACAAAGGACTTGAACCTCTTATTCAGCTCTTGTCTAGCCCGGATCCTGATGTAAAGAAAAATTCTGTGGAGTGCATATTTAATCTTGTTCAAGACATTCAGAATCGAGCGGCTGTGCAGCGTCTAAATGGACTCCCCCCACTTCTGGATCTGCTGCGCTCAGAGTTCCCAGTTATTCAGCAGCTTGCACTGTGCACCATAGAGAACATCACCACTGACAGCGAAACCCGTGTGGCCTTTAGAAATGTACAGGGCTTTGACAGAATCCTGGAGCTTCTTGCGACCAAAGAGTTTAGTGAACTGCATGAGGGGGCTCTCAGGGTTATCTGTAACTGTCTGGAAGACAGCGAGGCCATGCAGCTTATTCAGACGATGGGTGGCTTGGAACAGATACTGCAATTTGTTGGCACATCCACACTGCCTGAAGCGCAGGCTAATGCAGCCAAGGCCATAGCCAGGATGGCACAGAGCAGTGAGAACAGAAAAATTCTACATGAACGGAATGTAGAAAAAGCCCTCACGGATCTTCTCATGCAGGAGAATGAGAGTGTGCGCACTGCTGCATGCCAGGCTGTGGCAGCAGTGAGCAAAAACCTTTCCAGCAGGGACACATTCAGATGCCTGGATGCGATCGGGCCCATTGTGCAGCTGCTGAACAGTGAAGGAAGTGAGTTGAGAGCGGCCGCCGCAGAGGCCCTGTCCAGCCTGACCAACAGCAACAATCTCAATGCTTATGCTATATATGATGCAGGGGGTGATGAGCTCTTGGTGCAACAGCTGCGAGACAGCTGCACGGGAGCAGCTGTGTATGCAGCATCGGTCTTGACAAACATGGCATCGCAAGAGGAGCTGCGCAGAAGCATTCTGGCCCATGAAGCTATGCCAGCATTGGTGGAGCTGCTACACTCCACTGACAACAACACACTCATCAGTGCAATGCAGGCTGTGGCTTCATTGGCCTGTGATGCAGAGGCCAGGCTAGAGCTGAGAAACGTTGGAGGCCTGTCACCTTTAGTTCAGCTGCTCAAATCAATTCATGCTGAAATTCGGAGAAATGCTTGCTGGGCAATTAGTGTGTGTGCAAACGATGAAATAACAGCCCTAGAATTGTGCAATGCTGGAGCTCTAGAGATACTCCAGGAAATCAACCTGTCACCACACCGTAACAACAAATTTAGTGAGCTGGCACTACAGAAGCTTCTGGACAGCAATCTATCATTGAAGTATAGTCTGACAGGACACCTATCAGCCAGCGATATAACCACTGATGGCTTCTACGACCCTGGACAGATAAGAATGGGTCATCAGGTTCCTACCTTAGAGGATATATCAAAACAAGTTGTCAACCAACATCGAGCCACTATTGCGGTTAATGGGAAGCCCCCGGATCAATCTATTACCAAGGAACCAGATGATCGTAAGTCAGACAGTCCAACAGAAACTACCGCCTCATCTGTTATGAGCAGCAAAAGGAGCAGCAAAACACCAAGTAAAATGAAGGGAAAGGGTCAAAAAGAGGATGAGAAAAAGAAGGATGAGGATGAGAGTAAGCCACAGCAGGAGATGGTGGTGGATGAAGCATGGAGCTTGCCGTATGACGCTGCGTTTCATAACCTTCTCAAAGAGGCTGCCGAATCCATCTCGCCACTTCAGGATGAGGTCAAAATGTATACGGCTTTGGCCATGTTAGTGAGCGAGGCAATGGGTGGCCAGGTTGAGCCAGAGAAGCTGCATGACTTCCTGTGGGAACTGCACATTAGCGAGCTGAAGTTTGAAGCCTGTTCCAACATCATTCTCATTGGAAAGATAAAAAAGGGCACCTACGTTCACAGAGCATTGCTTTTTAAGGTTCTTGCAGACCGAATTGGGCTGAGCTGCAGTCTCATAAGAGGAGAATACAACCACGCCTGGAACGAAATCCTCATCACCGGTCCAAAGAAACGTTATGGATACTCTCAGCCTGAAATCTATATTATAGATCTCATGCACCAACCTGGAAACCTTATGAAAAGCAACTCACCAGCAGCTTTAGCATATCAGACCATTTAATATGTCAGCAAAGTGGTTAAGGCATCATTTATCATTTTAAGGCATATTTTATTTATTATATAACCTGTAAAAGTGAAGTGAATTAAATCCCAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118143 lncRNA downstream 22221 2115946 ~ 2116423 (-) True G103867
TU118168 lncRNA downstream 112532 2025886 ~ 2026112 (-) True G103892
TU118165 lncRNA downstream 116040 2022286 ~ 2022604 (-) True G103889
TU118161 lncRNA downstream 134037 2004342 ~ 2004607 (-) True G103885
TU118126 lncRNA downstream 152561 1985871 ~ 1986083 (-) True G103855
TU118205 lncRNA upstream 52187 2200622 ~ 2200950 (-) True G103929
TU118207 lncRNA upstream 54775 2203210 ~ 2203567 (-) True G103931
TU118215 lncRNA upstream 88424 2236859 ~ 2239022 (-) True G103939
TU118221 lncRNA upstream 116777 2265212 ~ 2265446 (-) True G103944
TU118240 lncRNA upstream 151376 2299811 ~ 2302001 (-) True G103961
CI01000018_02135812_02137218.mRNA mRNA downstream 1426 2135750 ~ 2137218 (-) True CI01000018_02135812_02137218
CI01000018_02129101_02134686.mRNA mRNA downstream 3958 2128393 ~ 2134686 (-) True CI01000018_02129101_02134686
CI01000018_02125709_02126759.mRNA mRNA downstream 11827 2125110 ~ 2126817 (-) True CI01000018_02125709_02126759
CI01000018_02080382_02098031.mRNA mRNA downstream 40342 2080332 ~ 2098302 (-) True CI01000018_02080382_02098031
CI01000018_02069280_02070789.mRNA mRNA downstream 67413 2069280 ~ 2071231 (-) True CI01000018_02069280_02070789
CI01000018_02195642_02198053.mRNA mRNA upstream 45746 2194181 ~ 2199400 (-) False CI01000018_02195642_02198053
CI01000018_02282563_02282856.mRNA mRNA upstream 134119 2282554 ~ 2283072 (-) True CI01000018_02282563_02282856
CI01000018_02356445_02369996.mRNA mRNA upstream 207491 2355926 ~ 2370015 (-) True CI01000018_02356445_02369996
CI01000018_02381118_02382741.mRNA mRNA upstream 232463 2380898 ~ 2382749 (-) True CI01000018_02381118_02382741
CI01000018_02389202_02488018.mRNA mRNA upstream 240767 2389202 ~ 2488018 (-) False CI01000018_02389202_02488018
TU118112 other downstream 178586 1959497 ~ 1960058 (-) True G103842
TU118149 other upstream 237773 2386208 ~ 2400903 (-) True G103873
TU119324 other upstream 1333669 3482104 ~ 3500514 (-) True G104968
TU119461 other upstream 1859262 4007697 ~ 4017817 (-) False G105104
TU119464 other upstream 1859262 4007697 ~ 4010575 (-) True G105104
TU119577 other upstream 2095032 4243467 ~ 4246010 (-) True G105200

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046222 True 2757 mRNA 0.44 17 NC_007135.7 17048078 ~ 17067284 (-)