Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047172 |
| length | 2927 |
| lncRNA type | inter_gene |
| GC content | 0.29 |
| exon number | 1 |
| gene id | XLOC_023380 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 17403470 ~ 17406483 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0099177 | regulation of trans-synaptic signaling | biological_process |
| GO:0098916 | anterograde trans-synaptic signaling | biological_process |
| GO:0099536 | synaptic signaling | biological_process |
| GO:0099537 | trans-synaptic signaling | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0050804 | modulation of chemical synaptic transmission | biological_process |
| GO:1990351 | transporter complex | cellular_component |
| GO:0034702 | ion channel complex | cellular_component |
| GO:0034703 | cation channel complex | cellular_component |
| GO:0097060 | synaptic membrane | cellular_component |
| GO:0044456 | obsolete synapse part | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:1902495 | transmembrane transporter complex | cellular_component |
| GO:0098794 | postsynapse | cellular_component |
| GO:0022803 | passive transmembrane transporter activity | molecular_function |
| GO:0022832 | voltage-gated channel activity | molecular_function |
| GO:0022836 | gated channel activity | molecular_function |
| GO:0022839 | ion gated channel activity | molecular_function |
| GO:0022843 | voltage-gated cation channel activity | molecular_function |
| GO:0022857 | transmembrane transporter activity | molecular_function |
| GO:0015267 | channel activity | molecular_function |
| GO:0022890 | inorganic cation transmembrane transporter activity | molecular_function |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | molecular_function |
| GO:0005215 | transporter activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0015075 | ion transmembrane transporter activity | molecular_function |
| GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
| GO:0008324 | cation transmembrane transporter activity | molecular_function |
| GO:0008066 | glutamate receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046227 | lncRNA | downstream | 34900 | 17366309 ~ 17368570 (-) | True | XLOC_023379 |
| TCONS_00047171 | lncRNA | downstream | 167270 | 17233526 ~ 17236200 (-) | True | XLOC_023378 |
| TCONS_00047170 | lncRNA | downstream | 276484 | 17124410 ~ 17126986 (-) | True | XLOC_023376 |
| TCONS_00046850 | lncRNA | downstream | 1180684 | 16204788 ~ 16222786 (-) | True | XLOC_023367 |
| TCONS_00047169 | lncRNA | downstream | 1255952 | 16146503 ~ 16147518 (-) | True | XLOC_023366 |
| TCONS_00046230 | lncRNA | upstream | 2912 | 17409308 ~ 17413929 (-) | False | XLOC_023381 |
| TCONS_00046229 | lncRNA | upstream | 2912 | 17409308 ~ 17413936 (-) | False | XLOC_023381 |
| TCONS_00047173 | lncRNA | upstream | 2912 | 17409308 ~ 17413946 (-) | True | XLOC_023381 |
| TCONS_00046852 | lncRNA | upstream | 615178 | 18021574 ~ 18022214 (-) | False | XLOC_023384 |
| TCONS_00046851 | lncRNA | upstream | 615178 | 18021574 ~ 18022214 (-) | True | XLOC_023384 |
| TCONS_00046226 | mRNA | downstream | 2998 | 17365102 ~ 17400472 (-) | False | XLOC_023379 |
| TCONS_00046224 | mRNA | downstream | 3327 | 17364745 ~ 17400143 (-) | False | XLOC_023379 |
| TCONS_00046225 | mRNA | downstream | 14207 | 17365102 ~ 17389263 (-) | False | XLOC_023379 |
| TCONS_00046222 | mRNA | downstream | 336186 | 17048078 ~ 17067284 (-) | True | XLOC_023375 |
| TCONS_00046220 | mRNA | downstream | 354200 | 17040211 ~ 17049270 (-) | False | XLOC_023375 |
| TCONS_00046232 | mRNA | upstream | 10754 | 17417150 ~ 17892385 (-) | False | XLOC_023382 |
| TCONS_00046231 | mRNA | upstream | 10754 | 17417150 ~ 17892385 (-) | False | XLOC_023382 |
| TCONS_00046233 | mRNA | upstream | 14407 | 17420803 ~ 17444067 (-) | False | XLOC_023382 |
| TCONS_00046234 | mRNA | upstream | 15033 | 17421429 ~ 17892325 (-) | False | XLOC_023382 |
| TCONS_00046235 | mRNA | upstream | 15326 | 17421722 ~ 18179535 (-) | True | XLOC_023382 |
| TCONS_00046223 | other | downstream | 264356 | 17136749 ~ 17139114 (-) | True | XLOC_023377 |
| TCONS_00046216 | other | downstream | 423742 | 16971104 ~ 16979728 (-) | True | XLOC_023371 |
| TCONS_00046210 | other | downstream | 503346 | 16896808 ~ 16900124 (-) | False | XLOC_023369 |
| TCONS_00046204 | other | downstream | 848487 | 16554869 ~ 16554983 (-) | True | XLOC_023368 |
| TCONS_00046203 | other | downstream | 1328355 | 16074089 ~ 16075115 (-) | True | XLOC_023365 |
| TCONS_00046236 | other | upstream | 140357 | 17546753 ~ 17546869 (-) | True | XLOC_023383 |
| TCONS_00046242 | other | upstream | 1046776 | 18453172 ~ 18456584 (-) | False | XLOC_023386 |
| TCONS_00046245 | other | upstream | 1063770 | 18470166 ~ 18485491 (-) | False | XLOC_023387 |
| TCONS_00046247 | other | upstream | 1067385 | 18473781 ~ 18485411 (-) | True | XLOC_023387 |
| TCONS_00046255 | other | upstream | 1154034 | 18560430 ~ 18598641 (-) | True | XLOC_023389 |
