RNA id: TCONS_00046850


Basic Information

Item Value
RNA id TCONS_00046850
length 799
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_023367
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16204788 ~ 16222786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGTGTCTTTTTCTTTGtgtacttcttttttttattaaccctCTTTTGTTTTGCTTGGCTTTTGATACGGGTGCGCAGCTCTCCGTTGGTGGACGCACCTGTTTCCCATGTCGGGATTAATTGGAGAGGGGATAAAGATGCCAACGAGGAGGCGAAAGGAAGACACAGCTTTAGTGGACCAGCCAGCATTTGATTTTGTGGTTGTTTtcttgtctttctttttttttttgtttctttctggggatttattatttcattcatttgttgtaGGGTAAGCATTTGTTATCGTTATTATTGGGTTTTctggtaaaaaataaattcatttaaaaatgattatgtttactaagtttcttttttttatgttgctttctCTCTGTTTAAAACGAGCTATTATTTTTGAGAGAGGTTGTAAcagggtccttgaacatgctgagtcagatcacaagtgttaaagggtcacgaaacaccaaaacacattttttgagctgttgacagtcgtatatgtgtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttcaagcaaattcgtacttccggtttgaaacgaatttttaaagctgcgtcacggtcatgacataatagcgttgtattccagcgtgcagactggacgtctgtgccagagtgtgtcttattacgtcttacagtgtgatgcattaatgcatgagtaaggcttggttcaaaccaatcagcgcgctctattgtgcaacttcattaatattcattagtgtcacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047169 lncRNA downstream 57270 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 455374 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 1172434 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 1759652 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047166 lncRNA downstream 2847136 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00047170 lncRNA upstream 901624 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 1010740 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 1143523 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 1180684 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 1180684 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046201 mRNA downstream 555910 15642577 ~ 15648878 (-) False XLOC_023363
TCONS_00046202 mRNA downstream 556152 15645468 ~ 15648636 (-) True XLOC_023363
TCONS_00046197 mRNA downstream 941646 15130979 ~ 15263142 (-) False XLOC_023361
TCONS_00046205 mRNA upstream 628427 16851213 ~ 16904234 (-) False XLOC_023369
TCONS_00046206 mRNA upstream 628427 16851213 ~ 16904803 (-) False XLOC_023369
TCONS_00046207 mRNA upstream 632944 16855730 ~ 16905018 (-) False XLOC_023369
TCONS_00046208 mRNA upstream 666727 16889513 ~ 16899406 (-) False XLOC_023369
TCONS_00046209 mRNA upstream 673543 16896329 ~ 16904865 (-) False XLOC_023369
TCONS_00046203 other downstream 129673 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 990803 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046187 other downstream 1668377 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046184 other downstream 2595074 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046161 other downstream 4048144 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046204 other upstream 332083 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046210 other upstream 674022 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046216 other upstream 748318 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046223 other upstream 913963 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 1323967 17546753 ~ 17546869 (-) True XLOC_023383

Expression Profile

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