RNA id: TCONS_00046201


Basic Information

Item Value
RNA id TCONS_00046201
length 5116
RNA type mRNA
GC content 0.35
exon number 3
gene id XLOC_023363
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 15642577 ~ 15648878 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGTGTgcaaacaatatatttactacACTTTATTTTACTATGTTCAGTAAATTAAGAATGCTGCAAAACAATGGAATTTGCATTATTAAAGGTTGTGCAAATAAACTCTCAAATCCACGATTTTTTCCAATGTCTAATTTTTAGGTTCAGAAACGTCCGTTCAACAAATATTACTGTACTTGAAAAGAAGGGATGGGCGTGAATCGCCCTCTAAAAAGGCTGAAGGAGCAATTGCTTTTCTGCACTCTTATTGGGCGCGCGCTTCACTCCTTCTCAAGACAGCTGAAGGAGCAGCCACACCGACCACACCAACTATGGATTTAACAGGTAACATACCGGGCAACGTGAAGTATAAGGGGGAAAAGAAAACACAATAATACCATATTCCGTGCAGACGCAACTGCTGctattcttttattaattttttcgtCATTATTTGATCGGGAAGGTATGTGGTTGCTGATATTTACTATAGGGAAAAGCATGTATAACTGTAAAAGCATAGTTTTTGacgtagtttgttttgttttggtggaTATTAGATGATGCGTGTATTTGCGTAATTGTATGTCGCCAAACTAAAATATAgagatttaattgtttttattttatatcagtACTTATCAATTGAGATATTACTATGTGTATACCCTAGTACTTTcttatttcttgttttttgtgtttcttttttcttgcattttttttttattcaggagACGTTTCAAATACTTTGAACACCTCCAACTGATGCGCAAAGACGAGAAGAAACGGAGTGTGTGACGGCGagttacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggttagtTTGGACCAGGTGATAGAGCCACATCAAACCTCCAAGGGGCTGGTGGTAAAGATCAGTTTGCACAGGATTCTTGTTCCGATCATGGTGCCAGCAGCCTGTCCCGGACCCTTTGCCATGCTGGCTCTCGCCTTTCTCCTGGGATGTGGCATAGGGCTCTGTCTGGGCCAGAATGACACCGAGCCCATCGTTCTGGAGGGAAAGTGTCTGGTGGTGTGCGACTCCAACCCCTCTTCTGACGGAGGAGTCACCTCTTCGCTCGGGATATCTGTGCGTTCCGGCAGCGCCAAAGTGGCTTTTTCGGCTGTCAGAGGGACAAACCATGAACCTTCGGAGATGAGCAACACATCCATGACCATTTATTTTGACCAGGTCTTAGTAAACATTGGCAATCATTTCGACCTAAAGGCGAGTCTGTTTACCGCGCCACGGAGAGGAATATACAGTTTCAGCTTTCATGTGGTCAAGGTCTACAACAGACAAACCATACAGGTGAACCTGATGCAGAACGAATACCCGGTCATTTCTGCTTTTGCTGGGGATCAGGATGTCACGCGGGAGGCAGCGAGTAACGGAGTTCTACTGATGGTGGAGCGCGAGGATCGAGTCTATCTCAAGTTGGAAAGAGGGAATCTAATGGGCGGATGGAAATACTCCACGTTCTCTGGATTTTTAGTCTTTCCTCTATAACTGAATCGCAAAACGCGATGTTTTCAAAAGACCAAGTTCTTTGAACAAGACTGAAATAACACAAAACTGCATATGGACGCGCCCCCAGGGAGTTCCCGCCTTTTTTGGCTGTCGCGATTGTTCTTGGATTTTATCAACAGGAAACAATCCGCAACTGACAATTACCTGGACCACTATATAAATGAGAAGATATTTATGACGAAGACGAACTTCAAATCCCGAACTAGGTGTATTTATCAgtgctttattttgtgtttgtataGCCTTAATGATTCGGCTTCCGTCCAGTGAGGTGTGTGGTGTGGAGCTGCGGAAGTGCTTTATGGCCCCAAAGCATTTTTGCACGAATGAAATGGAAGATTCCTGTTTTGTGCTGTCAATGATGTGTCGTTTGGATGCTGAACATACTGAAAATAAGCCAAATGTAGGCCACCTGCTATACAGTGATTATTAATAAGAAAAAAGATCATATATCAGCCAATGGAGACgtcttaaaaactttttttttttttttgctagacaTCTAATTtctaaaatacatatttacattatgGTGTGTTCTACATTCCGGATAATACGTAGCTTTGATTGATTTAGTGTTCAGTGACAATGCTCACAGATGTAAGTTGTGGAAAAAGAAAAGTCCCTATATAATGTCCCGcctaataaaatattgtattgtacaCATATTTACTCAATCTTTTCAATGACTATTAACGTGGACTATTTTGTAAGGAATGATAAAACTTGCGTTAACGAATCGCGCATGCGCAAAACTATGCTCGACTGGGGTGCAAACTGCCACAAGgcgctgtccatggtgctgaagaAACACACGGACTTCAGAAATCTTCTCAGATGTCTCCATACTGGATAATAAACAACCATGTATGCTGctctaaatatattaataatgttttttgcaACCTTGAATCATTTTCTGCTCGGCATAAATCCCAGAACTGTTCTTGCAAAGACTCATAATTACTTATGATAATTATACAGACTTGTATGAATGGACTGAATCAAGGTGATCGTAATGCTAAATTGGCCTTgatattcacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactagacacCTTTCATTCTCTGAATTTGCTGAATTTATTAAGTGCAGCAtagttttaatgttaaaatgtatCCTATCCCCTTAGAAAATGACAaatggtcagaataacaaatgtttttaattgaCGTGATGGAAAATCTGTCTTATTCAACTGTTCAATGATTTTTCTTTAGTCTTCTGAAGTTACAATATTGGCATTGTGTTATCTGAAAAGTAATATAAACATACCTTTttattcatgcaaaaaaaaaataaaaataatagaagaaataaacactataataaataagaaatgtCATTCGCAGTTTAACTTAAACATATAACTATAAACCATAAATCTAAAGAAACTTTTTAAATtgttccacacacacattcaatcttcacatttttcaattttatttaattacaaactgGCATTTTTTCTTCTTGTCTTATGTAGTACAATCTGCAGATTcatgaacacacacgcacacataccaCATAGTAAAAATATGCATTTGCACAAGACAAAGACAGAGCTGCAAGCATAAAGATCGACCCagaactacaatgtaaaaatatttatgatCATTTAGTCTTGACAACATATGTATTTAGTTTATTGTAACTTATTTAACTTAATGCATAACTAAACTAAAGGtaatcatgttttaacttaatttttaaatacgCATGCTGTTTAAGTCTGTTTAACATAATGTAAGctgaatggactcataaggttaatttgattcagctttaaaatttaaggcaaccccaagtttttttttttttttttttaccgtgtaCTAATAGCCATTTATGAACACCTATTATTTTAACTGCTTATACATCTGGGCTTAGATAAGCAGTACATATTTCTGGCCGTCttaagaaagagagaaaaaaaaggttacattttaataaaatttgaaaaaaaaaagcatgattcctccttaaaatataattttatgtcTCAAATTTTTAAAATGCTACTTCTTTTTCTTAATTTGTTAAAACTTTCGCTGCATTGAAGTTTATCAgacattcagtttatttataatggAAGCTGGTGAGCAAATGTAAGTTCAAATTTCTGCATGTAAATAAAGTTATCTTCATACGAAAGAGGCAAAATATCTGTAGAATTAGTTAGATCATAGCTCCTTTCGCACATTCACAGCTGGAGTGCTTTAAAGCGAGCCACTTAATTGTGAGAGCAGTGCTGAACTGTTTGTGCACATGTGTACTGGACTGTGTCATGAAGGCTAATTTGAGGTGTCAGTATTGTAATAAGGCCTGTCATAAGGCATAAGTGCAGTGAAGAAGATGAAGGCTGACTGTGTGTCTTTCAAAAGCTCTTAGGTGTAAACCCGggcaagagagaaagagagagagagtattggtgaacaaaacacaattacatcataatttgtttataaatgaatGTTTACCTTTGTCAAGCATTAGCGGATAGAAACAGAGAAGCAGGTGAAGCTCGGTTAATTTCTAAATTTGAGATGTAGGAAAAATTAGGAGGCATTCTAAGGGTTTTATATGCAAATGCCttttaattagttaaaaaaagaacTTAAAGGCATTTGGAacaaaacttaataaattaattaatttattttaatcatttaattggtatattaattatctttttttttgtcatgttttccaGTTCAATGTGATATTTTTAGAACTTGAGGGTGGACAATTAGTACTGTTATTTCTAgaaattaatttttcttttttaaaatatttcccaaattatgttcaacagagcaaggaaattttcacagtttgtctgataatattttttctcctggaaaaagtcctatttgttttatttccgctagaaaaaaaatgaaacaaaataaaaaacattttaaggacaaaattattagcccccttaagctatatatatatatatatatatatatttttcgatagtctacagaacaaaccatcattatacaataacttaattaccctaacctgcctagttaacctaacctagttaagcctttaaatgtcactttaagctgtgtagaagtgacttgaaaaatatctagtcaaatattattcactgtcatcatggaaaagataataaaaaaatcagttattagaaatgagttattaaaactattatgtttagaaatgtgttgaaaaaatgagaaaaaaaatctgctctcggtTGAACAAAAATTTGGGAAAAAGATATaataatagatatatatatatatacatatatacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacatacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacataatgttcAGTATAATTGAGTAcgccccattttgaaaataaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-12 Is expressed in dorsal habenular nucleus. Orthologous to human CBLN2 (cerebellin 2 precursor).

Ensembl:

ensembl_id ENSDART00000181854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047168 lncRNA downstream 610223 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 1197441 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047166 lncRNA downstream 2284925 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046181 lncRNA downstream 2295060 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00046176 lncRNA downstream 2387545 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00046849 lncRNA upstream 96192 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047169 lncRNA upstream 497625 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046850 lncRNA upstream 555910 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047170 lncRNA upstream 1475532 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 1584648 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046197 mRNA downstream 379435 15130979 ~ 15263142 (-) False XLOC_023361
TCONS_00046196 mRNA downstream 379435 15130979 ~ 15263142 (-) False XLOC_023361
TCONS_00046199 mRNA downstream 434163 15200529 ~ 15208414 (-) True XLOC_023361
TCONS_00046198 mRNA downstream 482919 15132153 ~ 15159658 (-) False XLOC_023361
TCONS_00046194 mRNA downstream 508691 15114092 ~ 15133886 (-) False XLOC_023361
TCONS_00046205 mRNA upstream 1202335 16851213 ~ 16904234 (-) False XLOC_023369
TCONS_00046206 mRNA upstream 1202335 16851213 ~ 16904803 (-) False XLOC_023369
TCONS_00046207 mRNA upstream 1206852 16855730 ~ 16905018 (-) False XLOC_023369
TCONS_00046208 mRNA upstream 1240635 16889513 ~ 16899406 (-) False XLOC_023369
TCONS_00046209 mRNA upstream 1247451 16896329 ~ 16904865 (-) False XLOC_023369
TCONS_00046200 other downstream 428592 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046187 other downstream 1106166 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046184 other downstream 2032863 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046161 other downstream 3485933 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 4230636 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046203 other upstream 425211 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 905991 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046210 other upstream 1247930 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046216 other upstream 1322226 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046223 other upstream 1487871 17136749 ~ 17139114 (-) True XLOC_023377

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_01583609_01585366.mRNA True 2108 mRNA 0.42 3 CI01000018 1582910 ~ 1586169 (-)