RNA id: TCONS_00046207


Basic Information

Item Value
RNA id TCONS_00046207
length 2637
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_023369
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16851213 ~ 16905018 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGACAACAAATAACGCGAGTGCGGGTACAGATTTATAATTCATGCAGATTGACTAACAAATAGACGTTACAAAATTGATTTGTGTATGTGCACACGTACAACTTGTGTATTTGAGAAAGGCCATGTGCTCGTCGTTGGTAACGTAATTTCCGATTACCTGTTCCTCCCGTTCATGCTTCTGACAGCACACCAGTGTGGATTTCAGTATGTTACATGACCGAAGAGGCTGTTTGTGTTGTTATTTGCAAAAGCAAGCTTTTATAATATGCCGTGTGAAGCTGCCGCTCACTTCTTAATTCTGTACGGATCTCAGCGTGGTCAGGCTCAGTCTATAGCAGAAGAGATCTGCCAACAAGCCGCTGAGCATGGATTTACAGCAGACATCAGCTGTCTGAGCAAGCATGACAAGTACAACCTAGACAGTGAAAGCCGCCCAGTCGTTTTTGTGGTTTCCACTACCGGTGATGGTGACCCTCCAGACACCGCTCTGAAGTTTGTAAGAAAAATCAAGAATAAATCTCTGCCACACGACCATCTTTCTCATCTGCGGTATGCACTGTTAGGTTTGGGAGACACAAATTATGCTAATTTCTGCAATGGTGGGAAGACCATAGACAGCTACCTGCAGAAACTTGGTGCTAAACATTTCTATGCCACTGGACATGCAGATGATGGCACTGGaCTAGAAGTAGTGGTGGATCCTTGGATCGAGGGACTTTGGGACGCTCTGAAAAAGGCATTTTCCACCATGTCCACTTCAGATCAACAGACCCTCAGTGACTGTACGCAGGACAGTAATCATCAAAATGCAtctgatcaaaaaaaaaatctagaagtTGATCTTCAACTTTTAAAGCTGAGTGAAGTAGACTCGCCAAAAGGAAAAACTGTTACATCTGACAGCATTGCTACAGAGATCGGCTCTACTTCATCGGTTGCATCTTTGAAGGAATCTGTCCCACCATTGTCAGAGTCTGTGCTTAATGTTCCTGCTCTTCCTCCTTCATATCTGGAGATCCTGTTGGTGGGGACAGAAAATGTAGAGGAGACAGTCCTGCCTGATAAAGACGGTTATTTTGAAGTGCCAATTTCGAAGGCAGTTCAATTAACTCAAGATGATGCAGTGAAAACTGCCATCTTGCTGGAGCTTGATATTTCGCAGCAGCAGGAGCAGGTTTATCAGCCTGGAGACGCTTTTGATATTCTCTGTCCAAACAGAGACAGTGAGGTTGAAGAGCTGCTGCTCAAACTGGATCTGCAAATGCAAAAGAACTGCACCGTTCAAGTTAATCTGCTTAAAAACACCAGCAAGAAAGcaGCAAAAGTTCCACTTCACATCCCACAGAATGGCTCTTTGCAGTTTATTCTCACCTGGTGTTTAGAGATAAGGAGCACTCCGAAAAAAGCATTTTTGCGAGCGTTGGTGGACTTCACTCAAAACGCTTCAGAGAAAAGAAGGCTTTTGGAACTGTGTAGTAAACAAGGATCGGCCGACTACAACAGCTTTGTCAGAgactcaagtgtgtgtgtgctggatcTCCTTCGGGCCTTCCCATCCTGCTGCCCCCCACTCAGCCTTCTCTTTGAACACTTGCCAAAGCTTCAACCCCGAGCCTACTCCGCCGCCAGCTCCAGCCTTCAGCACCCGGGGAAAGTTCATTTGGTGTTCAATGTTGTGGAGTTCCCAGCACGTCCCGAGCATCCGGCGAGGAAGGGGTTGTGTACGGGCTGGCTGGTCGATCACGTCTCCTCAATCTTGGAGCCTCATGGGACGGCACTGGCTTCAGAGCGTCCAGGCACATCAGCCCTGCCGAAGGTACATGTCAGAGCTCGTCCCAGCAGCACCTTCCACTTACCATCCGACCCCTGTGTTCCTGTAGTCATGGTTGGACCTGGGACTGGTGTTGCACCTTTTATTGGATTTCTCCAACAGAGAGAAAAAGAGCGTGAAGCAAACCAGGAGGCGACTTTCGGAGAGATGTGGCTGTTTTTTGGATGCCGTCACAAAGACAAAGACTTCCTTTTCAGagagGAGCTGGAGAAATTTGTGCATAATGGGACCCTGAGCCATCTGATTGTGTGCTTCTCCAGAGATGAACCCGATGCTGCGGAAACCGTTAACAGACCAACATATGTCCAGCATAACTTGATCCTCCATGCTAAAAATCTTGCCAAAATTCTCCTGGAAGACAAAGGCTGCCTTTATGTCTGTGGGGATGCTAAGAACATGGCAAAGGACGTGAATGACACTTTACTGGAGATCATTGGAAACGAACTTCAGCTTGATAAACTGGATGCAATGAAGATAGTGGCAGGACTTCGCGAGGACAAGCGGTATCTACAGGACATCTGGAGTTGAGAAAGCACACATAAATTACACGAACAAACGGCATCACATTCACAGACAGATGTGCAAGCTACTTTTTTGCTCACATCTGTGACACAGGTGCCATTTAGTGATAGTCAAGCTCATTAACAACCTGCTTTTCaatattttttctcttcttttcaaGTATTTAGAGAATTATCTGAGGCTCGATATGGTCGGATTAGATATGTTTGGTGGAAGTGTTTTAACTGTGCCTTTTATGCAATTATTAAAGAGGAGCACTGCATGACTGTTTCATTCTTTGAA

Function

GO:

id name namespace
GO:0050667 homocysteine metabolic process biological_process
GO:0009086 methionine biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0010181 FMN binding molecular_function
GO:0030586 [methionine synthase] reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101115-3 Predicted to enable FMN binding activity; [methionine synthase] reductase activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in homocysteine metabolic process and methionine biosynthetic process. Predicted to be active in cytosol. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in several diseases, including endocrine gland cancer (multiple); heart disease (multiple); hematologic cancer (multiple); homocystinuria; and homocystinuria-megaloblastic anemia cblE type. Orthologous to human MTRR (5-methyltetrahydrofolate-homocysteine methyltransferase reductase).

Ensembl:

ensembl_id ENSDART00000066759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046850 lncRNA downstream 632944 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047169 lncRNA downstream 708212 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 1106316 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 1823376 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 2410594 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047170 lncRNA upstream 219392 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 328508 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 461291 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 498452 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 498452 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046201 mRNA downstream 1206852 15642577 ~ 15648878 (-) False XLOC_023363
TCONS_00046202 mRNA downstream 1207094 15645468 ~ 15648636 (-) True XLOC_023363
TCONS_00046197 mRNA downstream 1592588 15130979 ~ 15263142 (-) False XLOC_023361
TCONS_00046212 mRNA upstream 7230 16912248 ~ 16917086 (-) True XLOC_023370
TCONS_00046213 mRNA upstream 57951 16962969 ~ 16975960 (-) False XLOC_023371
TCONS_00046214 mRNA upstream 57951 16962969 ~ 16980337 (-) False XLOC_023371
TCONS_00046215 mRNA upstream 60187 16965205 ~ 16979728 (-) False XLOC_023371
TCONS_00046217 mRNA upstream 116495 17021513 ~ 17023392 (-) True XLOC_023372
TCONS_00046204 other downstream 300747 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 780615 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 1641745 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046187 other downstream 2319319 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046184 other downstream 3246016 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046216 other upstream 66086 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046223 other upstream 231731 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 641735 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046242 other upstream 1548154 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 1565148 18470166 ~ 18485491 (-) False XLOC_023387

Expression Profile

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