RNA id: TCONS_00046213


Basic Information

Item Value
RNA id TCONS_00046213
length 4938
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_023371
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16962969 ~ 16980337 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGGGCAAGTACAAGCAGAGGAAATGTGAACGTCCCTTCAGCGCAGTAAAGCCCATGATTGGCCAGGAGGCCTCGAAAAGGTGAATATCTTCAGAATTAAATTTCCTACGGACACAAGAGGTACTGTCCTCTGATTGGCTCGGACACCACCTGTGACATGCCCGTGGCCAATCAGAGGTGCCTAATGTCGGGGGATGTGGAGGTCTACCTTTCCCAAGTGCATGACGGCAGCGTGTCGTCGGGCTTCAAAGCCTTGTATGAGGAGCGACTGCTTCTCGATGTCACTCTGCTCATCGAGGAACACCACTTCCAGGCGCACAAGGCTCTGCTAGCAACTCAAAGCGACTATTTCCGGGTCATGTTCACGGCAGATATGCGGGAACGTGACCAGGATAAGATCCACATGAAGGGGTTGACGGCAGCCGGCTTTGGTCATGTCCTTCGCTTCATGTATTATGGCTCTTTGGAGTTAAGCATGCTCACGGTGCAGGAGATATTACAGGCTGCTATGTACGTTCAACTCACTGAAGCTGTAGAGTTCTGCTGTTCCTTCCTGCTGGCCAAAATCTGCTTAGAGAACTGTGCCGAAGTCATGCGTTTGCTGGAGGACTTTAGCGTCGGTGTGGAAGGCGTGCAGGAGCAGCTTGATGCGTTCTTGTTGGAGAACTTTGTGCCCCTGATGGCCAGGCCGGACTTTTTGTCTTATTTGAGTTTGGAGAAGTTGATGGCATATCTGGATAGTGACCAGCTAAGCCGATTTCCAGAAATTGAGCTGTATGAAGCTGTGCAGGCCTGGTTGAGACACGACCGGAGACGCTGGAGACACACGGATGCAGTGGTGCAAAACCTACGCTTTTGTTTGATGACGCCTGCCAATATCTTCGAGAAAGTGAAGACATCAGAGTTCTACCGTTATTCCCGCCAACTGCGACTAGAAGTAGACCAGGCGCTCAGCTACTTCCATCAGGTGAATGAACAACCGCTGGCAGAAACCAAATCCAACCGCATCCGATCAGTGAGACCTCAAACTGCTGTATTTCGTGGAATGATCGGCCACAGCATGGTCAACAGTAAGATCCTCCTCCTTCACCGGCCTAAAGTGTGGTGGGAACTCGAAGGCCCTCAGGTGCCGCTCCGGCCAGATTGCCTGGCCATCGTCAACAACTTCGCCTTCCTGTTGGGTGGTGAAGAACTAGGCCCTGACGGAGAGTTTCATGCTTCTTCCAAAGTCTACCGCTATGACCCCAGACAGAACTCTTGGCTACGCATGGCCGACATGTCCGTTCCCAGATCAGAGTTTGCAGTCGGCGTTATTGGGAAGTATATTTATGCCGTCGCAGGTCGTACTCGCGATGAGACCTTTTATTCCACAGAGCGATATGACATTGTCGAGGACAAATGGGAGTTTGTTGACCCGTACCCAGTAAACAAGTACGGTCACGAAGGCACTGTGCTCAATGGGAAGTTGTACATCACTGGCGGCATCACCTCCTCATCCACCTCAAAGCAAGTCTGTGTTTTTGACCCAGGACGGGAAGGATCGTCCGAACATCGAACGCGGCGCACGCCAATCCTCACCAACTGCTGGGAGAACAAGTCGAAAATGAACTACGCTCGTTGCTTCCACAAAATGATCTCCCACAATGGGAAGCTGTACGTTTTCGGCGGGGTTTGTGTGATACTCCGTGCCTCTTTTGAGTCCCAGGGCTGCCCTTCGACAGAAGTGTACGACCCAGAGACTGACGAGTGGACTATTTTGGCCTCGATGCCTATAGGACGCAGTGGACACGGAGTGGCGGTGTTGGACAAACAGATCATGGTGCTTGGAGGACTTTGCTACAACGGTCATTACAGCGACTCTATCCTCACATTTGACCCAGAGGAGAACAAATGGAAGGAGGACGAGTATCCCAGGATGCCTTGCAAACTGGATGGACTGCAAGTGTGTAGTTTGCACTTCCCAGAATACGTTCTGGAACACGTGAGACGCTGCAGCTGAGTCTCTGCAACTTCTGGACAGTTTAGAAAACAAACGTTTACAGGTGTGACGAGTAATACTAATACTGTTGAAGCTTTTAAACTGTAGGCCAGTGCTTATTTAAGAAGAAAAAACCCTTTTTAGGCTTTCATTGTAAAAAGAAAGGTTTGTTACTTGGTCCGAGCATTGGCgttcttttaaaagaaaaaacaaaacacaaacagacGACCTTTTTGACTCATTGCACTGTAATCATCCTATAGAGCACATAATACTCTGCATCTTTCACATTGTCTTCTCTGTGACGTTCTACTTCTATATCCCTTCATTCTATACACAGGAAGTCATGTTTTTCCACAAGTAGTCTACAAGCTGCGTTTAGAAACGGAGACTAGGGGAACTCATGAAAAAAATGGAAAACTTCCATGTCCCTTTTTTCTTTAATACTTACTAATCTAAGAATGCATTTGTGCTGATACTAGTGATGTTGTAGTGGACGATATTGACTGTAATCGATGATGTTGACAAGCATTGCACTCGTATAAGGGCGTATATTACTGCTCTACAATAACACCGGTCCTCCACTGCTGACTGCAAAGGGAGAAAAAGAGGACGGCAGAGATTAGGGGACGCGTAGTTCCTACTTCTCCAACCTTTATTAGTTGTGCTTATgcttatttttaacttatttattaaaatggcaAAGCCTTGCCTTGATCAAATCCGTGTAATGTAATGAACTACTTtctgtgtgcgcgtgcgtgcgtgcgtgtgtgtgtctgtctcatGTTTGGTTTCACCAGCAAAGGGCTAAAGCACATATGCATCTCGTGTTTAATGTTTAACACTAAATGCAGTTCTAAGAGGTTAGGCGTCCACCAAGTATTCAATCAGCtgtagttaaagggatagtacacccatTAGTCAATAGTTCCTCAATATCATGTTCCAACATACTTTTTTGGACCACACTTAATGTCATTTAATGGACGAAGGATTATTATTTAGTGTTCCAAAGAAGTAAGCATGTGTTTAATTGATCCAACATTATTTTGGCAGAACAGTAAAGAAGATTTTAGTTGAAGCTTTGGTCcttcaaacaaacatacatacatacagtcaaAACAAAGTAAGACTGAATATTTCAATTTTTAAGACCTCAATGCATTGTCAGGAATCATGTGTATTACTTTTGTTTTGACTTTATTTTTCTGACTGCATTTTGTAAATCATCAAGGACTAGTTTTATCTACAGACCTTCCATAATATTCTACTGAAGAATAAAGTGAGTagtcttttgggtgaactatccctttaagccagATCTTGAAGATATTAGGCTCTGTAAGTTCCTGTTACGGACCCTTACATGTGATGCTGTGTGTTTCTTCAGAGTTCCTGGTTGGTTTGTACTTCCTCAAACACTGACTTTGACCTTTTCTCTCTGTTGTGTGACATCTTTCCATCCGAACCTCATGTACATATAGATGCCAAACTGTGGTCTGTAAGGGTCAAGCTGTAATAATCAGACGCAGCAATAGATTTTAACCTGgtcttgttatttattttagtagaATAACAGACAATaactataataatgataatccACAGCCCTGTATCTTGTTCTTGAGAGGAGTATAATCAGATCGCTAACTTGTTTACCAGAATCTGGTGGCTCACTGCTATTTAAAGACTTTGTAATTCATTTCCAGAAATAAATGTTCATACTGTCCGGCTGTCTGAGTTTTCTGACTGAATATAAGCACTCGCTGTGTTTTCTGTGTTTGGGGTTTAATGTGTGTTTGAGCCTCTGGATATCAGCATCTTATCCTGTAGGTTTATCCCTGTAAGAGGATCCATCAGCAGTACATGTGCTGTGACCTAAGCCTGTTTTCCAACTTGTGTGTTGCCACGTCTGTCAGAAGGTAAACACAGCAGAATTGTGCGTTTTTGTAGCTGAAATGGCAAAAGCTTGGTGCGGCACCAAGGTCATGGGGTTTGGTTTACAGGAACAGACCTTAGTTACAATAACGaggggttatttgagttactgtggcCTTTTCGAACTGATTCAgtgttctcctctgacctctggcatccaCAAAACATTTTCcaccacagaactgctgctcactggatattttctctcgcCCCACACACACTGTTCTCTGTAAACCCGagtgatggttgtgtgtgaaaatccctgtagatcagcagtttctgaaacactctgttcagcccgtctggcaccaacaatcaggCCACATTCAGAACTGCTTAAAACAaatttcctccccattctgatgatcGGTGAACTACAACAAATCAACTGAAGTGTTATTTTATATATCGTCACATTGgatttataaggttctgtctCCGTTCTgagtgattttgagatattgagcttaaaagtttttgcattcaatagcaaacagcatgtgtgtaatatttgttttttaaataaaaagtcttaaaatgttaacaacttaaaaaaaaaatcccacaatgtaaataagttgtcatttaataagaatatgtcatttcccagagatgggttgcgactggaagtgcattcgctgcgtaaaaacttgctggataagttggcggttcattccgctgtggcgactccgaattaaaaaagggactaagccgacaagaaaatgaatgaatgaaagactatgtcaaaaactcaattttgacaaaaatgtcagatagaaccttataattctaaggtgaccaTATAAATATTGCTGatgcaaaaatgcattttaaatttcaCTAATAACAAACCTGGGTATAGTTAGTTTTGTCATAATTTGAATGCAGTAAATTTGTCTGCCATGGACCTCTTGTTATATAAACTGCTGTGTCATTAACTCATTATGGTGTCTGAGTAtggtgtagctgtttttgtagcctgtgactttaaatccaaatgagctgctttCTCCCCGC

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040801-99 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 103. Orthologous to human KLHL15 (kelch like family member 15).

Ensembl:

ensembl_id ENSDART00000180687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046850 lncRNA downstream 740183 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047169 lncRNA downstream 815451 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 1213555 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 1930615 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 2517833 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047170 lncRNA upstream 148450 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 257566 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 390349 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 427510 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 427510 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046212 mRNA downstream 45883 16912248 ~ 16917086 (-) True XLOC_023370
TCONS_00046207 mRNA downstream 57951 16855730 ~ 16905018 (-) False XLOC_023369
TCONS_00046209 mRNA downstream 58104 16896329 ~ 16904865 (-) False XLOC_023369
TCONS_00046211 mRNA downstream 58141 16900125 ~ 16904828 (-) True XLOC_023369
TCONS_00046206 mRNA downstream 58166 16851213 ~ 16904803 (-) False XLOC_023369
TCONS_00046217 mRNA upstream 45553 17021513 ~ 17023392 (-) True XLOC_023372
TCONS_00046218 mRNA upstream 51350 17027310 ~ 17029374 (-) True XLOC_023373
TCONS_00046219 mRNA upstream 55169 17031129 ~ 17039638 (-) True XLOC_023374
TCONS_00046220 mRNA upstream 64251 17040211 ~ 17049270 (-) False XLOC_023375
TCONS_00046221 mRNA upstream 65863 17041823 ~ 17047918 (-) False XLOC_023375
TCONS_00046210 other downstream 62845 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 407986 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 887854 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 1748984 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046187 other downstream 2426558 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046223 other upstream 160789 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 570793 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046242 other upstream 1477212 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 1494206 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 1497821 18473781 ~ 18485411 (-) True XLOC_023387

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02080382_02098031.mRNA True 2880 mRNA 0.49 8 CI01000018 2080332 ~ 2098302 (-)