RNA id: TCONS_00047169


Basic Information

Item Value
RNA id TCONS_00047169
length 318
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_023366
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16146503 ~ 16147518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGACACATCAAAATTCAAGCATGACAAATCCAAGCTTGATTAATTAGAACACCAGTATAAATTCAGCAATCAGAAGAAAAACACTGTCTGCTACTGAAAATCATCAATATGCATTTAACACCGTTACAAAACTCGTTTCATCTGTTGTCTTCAATGACGATTGTTCTCCTCGGATATGTGTCTATCTCCACAAAAATATACCGAAATTCATACTTCCCTGTCTCAGGATTCTcctttgttcaATCCTTTTTTATGCACCtttagcagcaattacagcctcaagtctttttgaatatgacgccacaagcttggcacag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046849 lncRNA downstream 397089 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 1114149 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 1701367 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047166 lncRNA downstream 2788851 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046181 lncRNA downstream 2798986 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00046850 lncRNA upstream 57270 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047170 lncRNA upstream 976892 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 1086008 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 1218791 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 1255952 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046201 mRNA downstream 497625 15642577 ~ 15648878 (-) False XLOC_023363
TCONS_00046202 mRNA downstream 497867 15645468 ~ 15648636 (-) True XLOC_023363
TCONS_00046197 mRNA downstream 883361 15130979 ~ 15263142 (-) False XLOC_023361
TCONS_00046205 mRNA upstream 703695 16851213 ~ 16904234 (-) False XLOC_023369
TCONS_00046206 mRNA upstream 703695 16851213 ~ 16904803 (-) False XLOC_023369
TCONS_00046207 mRNA upstream 708212 16855730 ~ 16905018 (-) False XLOC_023369
TCONS_00046208 mRNA upstream 741995 16889513 ~ 16899406 (-) False XLOC_023369
TCONS_00046209 mRNA upstream 748811 16896329 ~ 16904865 (-) False XLOC_023369
TCONS_00046203 other downstream 71388 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 932518 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046187 other downstream 1610092 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046184 other downstream 2536789 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046161 other downstream 3989859 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046204 other upstream 407351 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046210 other upstream 749290 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046216 other upstream 823586 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046223 other upstream 989231 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 1399235 17546753 ~ 17546869 (-) True XLOC_023383

Expression Profile

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