RNA id: TCONS_00004448


Basic Information

Item Value
RNA id TCONS_00004448
length 1464
RNA type mRNA
GC content 0.51
exon number 14
gene id XLOC_002343
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38708099 ~ 38729185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAGAACTGAAACGaccTACGACAATGTCTCTCACGTGAACTACGGTTTCCATGATGAGGAGCAGCGGCCGCCTCCATATGCACCGTCTTCTGGAGTAAACCCGGCTTTATCTCAGTACCCCGCCCCTCCAAACACACAGCATCTGCCCCAAAATCCCCATGTGCTTTACCCTTCACAGAAATACTCACCTGCGCACAGCCTGCCTCACTACACACCTCAACCAGCACTTATTAACACTCACCATACAGTCACACCTACAATCTACCTGGACACCAATCCAGTCCACAAAGTTTCCAGGAGAAAAAAATGGCCATATATTGTGGGCACAGTCGTCACACTGCTGGTCATTGCTGGAGTCGTAGTTGCGGTGCTTTGGTTTTATGGGTTGTTTGCGTGTTTGCAAGGACGGATGTGTGAAGCAGATAAAAAGTGTGTCAGTGTGTCGCTGTGGTGTGACGGTACGGTGGACTGTCCGTCAGGAGAAGATGAAGCTCAATGCTATCGTCTGTACGGACCTAATTTCCTCCTTCAGAAGTACTCAAATGTGAGCGCTAATTGGAAAAATGTCTGTTCAGATGGATTTAATGACAACCTGGCCAAGCAAGCCTGTGCGGAGATCGGATACAAacacatgtGGGCTAGCTACTCAAGCTGGTTTTTTCcctcactttcgtcaattggTTCAGCCTGTCAATCTTCCACAGCAGTGTCACTCAAATGTACTGATTGTGGGCGGAGCACTGGGAACCGGATTGTGGGTGGGACCACTGTGACCTCGAAGGGGGTGTGGCCATGGCAGGTCAGCCTGCATTATTCTGGAAGGCATCTGTGCGGCGGCTCCATCATCACTCCTTACTGGATCCTTACTGCGGCGCACTGCGTTCATCAGTTTTCAAATCCAGGGGGCTGGACGGTGTATGCTGGATATCTGACCCAATCAGAGATGGCGTCGGCCTCCGGAAACTCTGTAAACCGAATTGTCATTCATGATTTCAACCCAAACACCAATGAGAATGATATCGCACTAATGAGGCTAAACACAGCACTCACTATTTCAACGAACATCAGGCCAGTCTGTCTGCCAAATAAAGGCATGAGCTTCACTGCGCAGCAGGACTGTTACGTCACTGGATGGGGAGCCCTGTTTAGTGGAGGCTCTTCCTCAGCAACCCTACAAGAGGCCAAAATCCAGCTGATCGACAGCACGATTTGTAACAGCCGGCCTGTGTATAACGGACTGATCACCGACACCATGATCTGTGCTGGAAAGCTGGCAGGCGGCGTGGACTCCTGTCAGGGGGACAGCGGTGGTCCTCTGGTCACCAATGTGCGCTCTCTCTGGTGGCTGCTGGGAGACACGAGCTGGGGTGATGGATGCGCTGTCAGAAACAAACCCGGAGTCTACGGAAATGTGACCTACTTCCTTGACTGGATCTACCAGCAAATGCGGaaatattag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko05215 Prostate cancer
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-041212-48 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS2 (transmembrane serine protease 2).

Ensembl:

ensembl_id ENSDART00000172306

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005932 lncRNA upstream 274890 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00005931 lncRNA upstream 673264 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005728 lncRNA upstream 818538 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00004431 lncRNA upstream 978939 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004430 lncRNA upstream 1134429 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004449 lncRNA downstream 20081 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 20167 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 20181 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004454 lncRNA downstream 354827 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004466 lncRNA downstream 554811 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00004446 mRNA upstream 9133 38663917 ~ 38698966 (+) True XLOC_002341
TCONS_00004445 mRNA upstream 44353 38643304 ~ 38663746 (+) True XLOC_002340
TCONS_00004444 mRNA upstream 87585 38610741 ~ 38620514 (+) True XLOC_002339
TCONS_00004443 mRNA upstream 105538 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004442 mRNA upstream 121439 38560032 ~ 38586660 (+) True XLOC_002337
TCONS_00004450 mRNA downstream 46223 38775408 ~ 38958275 (+) False XLOC_002345
TCONS_00004451 mRNA downstream 46774 38775959 ~ 38974445 (+) False XLOC_002345
TCONS_00004452 mRNA downstream 77534 38806719 ~ 38957737 (+) False XLOC_002345
TCONS_00004453 mRNA downstream 84204 38813389 ~ 38957741 (+) True XLOC_002345
TCONS_00004455 mRNA downstream 362168 39091353 ~ 39123213 (+) False XLOC_002347
TCONS_00004447 other upstream 24319 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 159894 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 219270 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 1560315 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1747409 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 963192 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1031569 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1821545 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1825732 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1870750 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00036045_00044944.mRNA True 2538 mRNA 0.43 12 CI01000197 36045 ~ 45973 (+)