RNA id: TCONS_00004452


Basic Information

Item Value
RNA id TCONS_00004452
length 6267
RNA type mRNA
GC content 0.55
exon number 33
gene id XLOC_002345
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38775408 ~ 38974445 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAACTGTATCACTGGCTACTGGCtggaattaagttacattgcttgAATTTCACTTTCAATTATTGAGGTGTCTCTATTCACTGATAGACTTAAAAGGGCTATAGAGCGACTGAGGACAGAAGTCCAGTGCCATGCAATCTTAACAAACAATCCCCATGGAgcgatattttcttttctttcttttctatcTAACATGGAGTGGCTTCAGACTAAAAAGGAATGTGTTTGTGTCAGTTCTCAGTGAAGACCTACATTCCAGCTTGTATTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTCGCCAGCACCACGGGGACTCTGGTTCCCTGTCCTGCAGCAGCGGTGCCGCCTGCTACCCTGCGCTGGTATCTGGCCACCGGCGAGGAGAGCTACAACGTCCCAGGGATCCGCCATGTCCACCCCAACGGCACTCTCCAGATCTTCCACTTTCCTCCGTCCAGCTTTAGCAAAGTGATCCACGACAACACTTACTATTGCACAGCGGAAAATCCTTCAGGGAAAATTAGAAGCCAAGATGTTCATATTAAGGCCGTCTTACGGGAGCCCTATACGGTCCGTGTGGCGGACCAGACCGCGATGAGAGGCAGCGTAGCGGTCTTCAAGTGCATTATTCCTTCCTCAGTGGAAAACTACATCACTGTTGTGTCATGGGAGAGAGACACCGTACCACTCGTCTCAGggGCTCGATTTCTCATCACGTCCACGGGGGCCCTGTACATCCTGGATGTGCAGAAGGAGGACGAACTGTTCAACTACCGCTGCATGACGAGACATCGCTACACGTCCGAGACACGACAGAGCAACAGCGCACGGCTCTTTGTGCCAGATCCTTCAAACTCAGCTCCTGCAATACTGGATGGCTTTGAGAAGCGGGAGGTCATGGCGTCCCACAGAGTGGAGCTCCCATGCAAAGCCTCTGGTCACCCGGCACCAAAATACCGCTGGCTAAAAAACAACAGGCCGCTGGAATCAGACTCGCGTTTCCGTCAGAGCGTAACGGGCCTGCTGATCGAGAGAGCCCAGCCCAGTGACACCGGCAGCTATGTCTGCGAGGTCTGGAACAGCTACGGAAATGCAGAGGTCATCGGTCGCCTCACTGTAAAAGAACCTCTTAAAGCTGTGGTCAGTCCGCGAAAGGTGAAAGGCAGCGTGGGCAGCCAAGTGTCTTTATCCTGCAGCGTTACTGGCTCCGATGAGTTCGAGCTCTCGTGGTACCGAAATGGCGATAAGATTAACACCGGCGCCAACATACGCATGAACGGCATCAATAAAGAGAACCTTGTGATGGACGGGATGGCGAAGAGTGATGGAGGAGTGTACCAATGCTTTTCCAGGAAGGCCAAAATGTCAGCTCAGGATTTCGTTCAAGTCATTTTAGAAGATGGAACGCCGAAGATCTTGTCCGCCTTCAGTGAGAAAGTTGTTGGTCCCAATGATTTTGTCTCGTTGACGTGTCATGTAAAGGGAACTCCGCAGCCGGCCATCACCTGGACGCTGGACGATGAGGTTGTGGCCAAAGACAGTCGCCACCGTATCGTTCACAGCATAACGGCAGAGGGGAACGTGGTCAGCTACCTGAACATCTCCCACATCCAGGTCCGGGACAGCGGGGTCTATCGCTGCACATGCAATAACTCGGCGGGGACGGTCTCCTACCAGGCTCGAATAAACGTAAGAGGTTCCGCCGACATTCGACCAATGAAAAACCTCACTGCCATAGCTGGGTGGGACATGTACATtcactgccatgtgattggctaccCATATTACTCCATCAAATGGTTCAAAAACTCCAACCTCCTCCCTTTCAATGACCGTCAGCGAGCATTTGAGAACAACGGCACGCTGAAGCTGCTGAACGTGCAGAAGGAGTTGGATGAGGGCGAGTACAGCTGCCATGTGCAGGTGCAGCCGCAGCTCTTCAAGAACCAGAGCGTCCACGTCACGGTCAAAGTACCTCCCTTCATCCAGCCTTTTGAGTTTCCTCGTTACTCCATCGGCCACCGCGTGTTTGTGCCGTGTGTTGTCCGATCTGGTGACCTTCCCATCTCCATCACCTGGGAAAAAGACGGAAAGTCCATCAACGCCAGCCTGGGTGTGACCATCGACAACATCGACTTCACCAGTTCCCTGCGCATCTCCAACCTGCAGCGCGTCCACAACGGCACCTACACCTGCATCGCCCAGAACGATGCCGCCGTGGTCAAATACCAGAGCCAGCTCATCGTCAGAGTTCCACCAAGGTTTAAAGTCCAGCCTCAGGACCAGGATGGAATCTATGGGAAATCAGTGATCTTGAACTGCTCTGCGGATGGAGAGCCCAGGCCCACTATTGAGTGGAAATACTCCAAAGgtgcggGGGTGCCCCAGTTTCAGCCCATCGCTCTGAACTCCGGCTTCAGGGTGCAGCTGCTGGGGAACGGCTCGCTGCTGATCAAGCACGTTCTGGAGGAGGACGCAGGTTATTACCTGTGCAAGGTCAGCAATGACGTGGGCGCCGATGTCAGCAAGTCCATGTACCTCAACGTGAAAATTCCCGCCATGATCACATCGTATCCCAACAACTCGCTGGCCACGAAGGGAGAGAAAATCGAGATGAGCTGCAAGGCCCACGGTGAGAAGCCCATCATGGTGAGGTGGGAGAAGGAGGTGGAGAAGGAGAAGCAGTCGCACATGATCAACCCAGACATGTGGAGGCACACTGTGACCGTCAAGAACGTCGGCGATGAGGTCGTCTCCACCCTGCAGATCTACCCAACGATGAGAGAGGATTCGGGCTTCTTCTCCTGTCATGCCATTAACTCTTACGGTGAAGACAGAGGAATCCTTCAGCTGACTGTTCAAGAGCCGCCAGAGCCTCCCAAAGTGGAAATTCGAGAGGTGAAGGAGAGGACCATCGCCCTCCGCTGGACCATGGGTTTTGATGGTAACAGTCTCATCACCGGCTACGATATTGAGTGCAAAAACAAAACAGAAACATGGGAAAGAGCTCGCAGAACCAGAGATGTTTCCCCCACCCTGAACCAGGCCACCATCATTGAACTGCACCCGTCATCCACCTACAACATCCGTATGTTCGCCAAGAACCACATCGGAGACAGCGAACCCAGCAATGAGCTCACCGTTACCACTGATGAAGCCGATCCTGAAGGACCTCCGCAAGACGTCACGCTGGAAGCAATCACATCCCAGAGCATTAAAGTTACATGGAAGGCGCCGTTGAAACACCTCCAGAATGGCGTGATCAGGGGCTATCAGGTGTGCCATCGAGAGCACTCCACCAACGGCAGCCATCAGTTCGTCTGCATTAGTGTGGAGGCCACAGGAGAAACCGAGTCCCTGAGCCTCAACAACTTGAAGAAGTTCGCTGAGTATGAGGTGGTGGTGCAGGCCAGCAACAGCGCCGGTCCGGGGCCTGCCTCCAGTGAAGTGCGGGCCACGACTATGGAGGACGTTCCCAGCAGAGCTCCAGAGAAGGTGGTGGCCACCGCTGCATCCCCAGAGAGCATCTCTCTGTCCTGGCAGACTCCGGCTCGAGAGGCTCTGAACGGCGTCCTACAGGGCTTCCGCATCATCTACTGGGCCAATCTACCAGACGGAGAACTAGGAGAAATCCGAAACGTCACGACTCATAAGGCCCCGCTGGAGCTGGAAGGTCTGGAGAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACCAGAGCAGGAGACGGAGTCCGCAGTGACCAGATCTACATCCGCACCAAAGAGGACGTGCCGGGTCCGCCTGGCGGTGTAAAGGCAGCTGCAGCTTCCAGCTCTGTGGTTTACGTTTCTTGGCTTCCTCCGCTAAAGCTGAATGGCGTCATTAGGAAATACACAGTCTTCTGTTCCAGCACGTCTCCCACGGTGGTCAGTGAGTTTGAAGTGGCCCCGGATGAGTTCCTGCACCGCGTTCACAATCTCAGCCGTAACAGGAAGTACAATATCTGGGTGATGGCGGTGACTGCTGCCGGACGTGGCAACAGCAGTGATGTCATTACCGTTGAACCCCTGGCCAAAGCTCCTGCCAAAATCCTCACCTTCAGTGGTACGGTTACAACACCGTGGATGAGGGACGTGGTTTTACCCTGCAGAGCCGTCGGAGACCCTCCTCCTGCCATCAAATGGCTGAAAGAGAGCGGGAGTCCGGCCCCTGCGGTCATCGATGGAAGACGCAGCATCCACGGAAATGGCAGCTTCATCATTAAGACTGTGAaagcagaggattctgggtattACACGTGTGTCGCTAGCAATAACTACGGGACGGACGAAATCATTCTGAATCTCCAGGTTCAAGTCCCTCCTGACCAACCTCGTCTCACTGTGACCAAAACCACCACCACATCTATAACCGTGACCTGGACGCCCGGAGACAACGGCGGGAGTTCCATTAGAGGATATATTCTGCAATACTCAGAGGACAACAGTGAGAAGTGGGGAAGTATTTCCATCAGTCCCAGTGAACGTTCATACCGTCTGGAAAACCTTAACTGCGGCACTTGGTACAAGTTCACACTCACGGCCCAGAACGCTGTTGGTCCGGGTCGAATCAGTGAGATAATCGAAGCTAAGACTCATGGGAAAGAGCCGCAGTTCTCCAAAGAGCAGGAGCTGTTCACGAGCATTAACGGAACGTCCGTCAAGCTCAACCTGATTGGCTGGAATGATGGCGGCTGTCCAATCACGTCATTCACCCTGGAGTACCGTCCGCTGGAAAGTCCGGTGTGGACCAAAGCTAAACGCACGTCTCTCAGCAAGAGCTACAACCTGCTGGACCTGCAGGAGGCCACGTGGTACGAACTGCAGATGAAGGTGTACAACAGCGCCGGGCTCGCCGAGAAACGAGTCAAGTTTGCTACGCTCAGCTATGATGGCAGCACCATTCCTCCATTGGTGAAGACTCTGGTGAAGGACCCCGTGAAGAAAACCAGCAATGAAGGGATGAAGATGATGGTGACGATCTCCTGCATCTTGGTGGGGATGGTGCTGCTCTTCGTCCTGCTGATGGtgctgaggaggaggaggagagagcaGAGGCTGAAGCGGCTCAGGGATGCAAAAAGTTTGGCTGAAATGCTTATGAGTAAGAACACCAGGCCATCAGACACCATGAACAAGCAGCAGCAGACCCTCCGCATGCACATTGATATTCCCCGAGCGCAGCTGCTCATCGAGGAGAGAGACACGATGGAGACCGTGGATGACAGATCCACCGTCCTGTTGACCGATAATGACTTCGGAGAAACTGCCAAGCAGAAATCAGCCACCGTCACGCACTCCGTCCACTATCAGTCTCTGTCTCAGGCCACCGGACCGCTGGTGGACGTCTCGGATGTCCGTCCAGGGACCAGTAAGAGCAGTCTGTCAAATCCCACCTCTCGGCGTACTGCTAAAGCTGGTCCGGCGGCTCGTAACCGATATGCTAGTCAGTGGACGCTGAACCGGCCTCATCCACCCGTCTCTGTCCACACTCTCAGCACTGACTGGAGGCTCGGGACGCCCAGAGTGGCTGGATCAGTGGACAAGGAGAGCGACAGCTATAGTGTCAGTCCATCACAGGACACAGACCGCGCTCGCAGCAGCATGGTGTCCACCGAGAGCGCGTCTTCTACATACGAGGAGCTGGCCAGAGCCTACGAGCACGCCAAGATGGAGGAGCAGCTGCGACATGCCAAATTCACCATCACCGAGTGCTTCATCTCAGACACATCCTCTGAGCAGATGACCGCCGGTACCAACGACTACACCGACAGTCTGACTTCCAGCACGCCGTCAGAATCGGGCATCTGCAGGTTCACGGCCTCACCGCCCAAACCACAGGACGTCTGCAGGGTCATCAACATGGCCGTTCCCAAAGCCCACAGACCAGGAGGAGAGCTCGTCCACCTTCCTCCATACCTGCGGATGGACTTCCTCCTAAACCGGGGAGTGTCAGGAACGTCTCGGGAAGCGGCGATGGGCCAGGCCTGTCTGGAGCCGCAGAAAACCCGCTCGCTGAAGCGTCCCGCCCTGCTGGAGCCCACGCCGATGGAGGTGCCGACCAGCAGGGACGTGCAGCAGTGGCAGTCAGGCACGGCCTCTACACTTCCACAGAGAGAGGCCGGGACGGACTTGGCGCAGGCGGCCAAAATCAGCACCTCCCAGGAATCACTGCTGGACTCCAGAGGACACTTAAAACAGACCAACAATCCCTACGCAAAGTCCTACACACTggtataa

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0070593 dendrite self-avoidance biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098632 cell-cell adhesion mediator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050310-7 Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within cell migration involved in gastrulation. Is integral component of plasma membrane. Is expressed in nervous system. Orthologous to human DSCAM (DS cell adhesion molecule).

Ensembl:

ensembl_id ENSDART00000184416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004449 lncRNA upstream 46275 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005933 lncRNA upstream 47510 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005729 lncRNA upstream 55207 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005932 lncRNA upstream 373510 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00005931 lncRNA upstream 771884 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00004454 lncRNA downstream 126275 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004466 lncRNA downstream 326259 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005730 lncRNA downstream 371565 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00005731 lncRNA downstream 822824 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005934 lncRNA downstream 951401 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00004448 mRNA upstream 77534 38708099 ~ 38729185 (+) True XLOC_002343
TCONS_00004446 mRNA upstream 107753 38663917 ~ 38698966 (+) True XLOC_002341
TCONS_00004445 mRNA upstream 142973 38643304 ~ 38663746 (+) True XLOC_002340
TCONS_00004444 mRNA upstream 186205 38610741 ~ 38620514 (+) True XLOC_002339
TCONS_00004443 mRNA upstream 204158 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004455 mRNA downstream 133616 39091353 ~ 39123213 (+) False XLOC_002347
TCONS_00004456 mRNA downstream 133979 39091716 ~ 39123120 (+) True XLOC_002347
TCONS_00004457 mRNA downstream 206901 39164638 ~ 39179337 (+) True XLOC_002348
TCONS_00004458 mRNA downstream 241810 39199547 ~ 39207488 (+) False XLOC_002349
TCONS_00004459 mRNA downstream 242476 39200213 ~ 39207900 (+) True XLOC_002349
TCONS_00004447 other upstream 122939 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 258514 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 317890 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 1658935 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1846029 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004472 other downstream 734640 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 803017 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004486 other downstream 1592993 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 1597180 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 1642198 40599935 ~ 40600502 (+) True XLOC_002373

Expression Profile

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