RNA id: XM_021570293.2


Basic Information

Item Value
RNA id XM_021570293.2
length 4363
RNA type mRNA
GC content 0.50
exon number 38
gene id LOC110494954
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49604663 ~ 49657967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGTGTTTTACCTCTTCACCTTTTCACCTTCTTTCCGGGGTTCTTACAGCAAGTGATGCGGCTAGGTTACCCCCCACACACATATTGGTTCTTTTCGCTCATGCTCTCTCGCGCCCTGCTTCGCGCTCTTTGCTCTACCTGCAACACCTCGTTTTACTCCCCCAGTGTTCCCTGGGATAGCAACTGAGGTGGTTTTCAGATTGAGCTCCGCAAATCTGGGAAAATCCCCACGAGAGAATATCGTCATTTGCTTGAGAGACGATAACAGCAATTGTAATGTTTTCCAGAAATGGAGGCTTGACTTGAGTCTCTTGCTGTTCCTCCCTGTACCGACATTCATAGTTCAACCATCTCCTTCAGCACGCGGGTCCCTTCAGGAGTGACAACTGGCACCTTGGACGCGGGACTGGCGCGAGGGAGGCGGCACGAATGTGCCGGGTCTGTATGTGCTGCTTTTCGCGCTGAGTGCGTTTTCGGGACTAGTAAAAGAAGAGCTTGCGCGTGCCATTGTACCGGGTTCGGTTGTCGGGAAGACTCGTGAAGATGCTGTGGAATTGGAGGATCCTCTTTCCACACGTGTGCTGCGCCAGCTTCCTTCTGTCCTGGATTATGCTGGGCACGGTGGTAGAGGTGATGGGGTCCCAGCCAGGGATTCCTCTCTCAGTGGTGAAGTTATGGGCCTCAGCGTTTGGTGGAGAAATTAAATCAATTTCTGCAAAATACTCTGGATCCCAGCTGCTGCAGAAGAAATATAAAGAATTTGAGAAGTCCGTCCGAGTGGAAGAAATTGATGGCATGAAAGTGGTCAAAACTCTCGCAAAGAAGATGGAGGAAATGTTCCGGATGAAAAAGGAGGCCATGCGGCGGCTGGTGGAGGCAGCAGAGGAGGCCCATCTACAGCACGAGGAGGATCCAGAGCTGCAGTATGAGTACTTTAACGCGGTGCTGATCAATGAGGTGGATGAGGAGGGCAACAATGTGGAGCTGGGAGGCGAGTTCGTTCTGGAACCCAACGACCACTTCAACAACCTGTCAGTCAACCTCAGCCTCAGTGTGGTGCAGGTGCCCACCAACATGTACAACAAAGatCCAGCCATAGTGAATGGGGTGTACTGGTCAGAGGCCTTGAATAAAGTGTTTGTGGATAACTTTGAAAAAGATCCATCCCTGATATGGCAGTACTTTGGCAGTGCCAAGGGCTTCTTTAGGCAGTATCCCGGGGTCAAATGGCATCCAGACGAACACGGGGTCATCGCCTTCGACTGCAGGAACAGGAAGTGGTACATCCAGGCAGCGACGTCTCCTAAAGACATGGTGATCCTGGTGGACGTTAGTGGCAGTATGAAGGGCCTGAGACTGACCATTGCCAGACAGACGGTCTCCTCTATACTGGACACACTGGGAGACGACGACTTCTTCAACATCATCGCTTACAATCAGGAGATGCACTATGTGGAGCCTTGTCTGAACGGTACATTGGTACGAGCAGACAGAAATAATAAAGCTCATTTCCGAGAACATCTGGACAAGCTGTTCGCCAAAGGGATTGGTCTGCTGGGTGATGCTCTGACCGAAGCGTTCACCATTTTAAATGATTTTAACCAGACTGGGCATGGCAGTGTGTGTAGCCAGGCTATCATGCTGGTGACTGACGGGGCAACGCAGATGTACGACGATGTCTTCGCCAAGTTCAATTGGCCAGACAGAAAGGTGCGCATATTCCCTTACCTGATTGGCCGAGAGTCTGCCTTTGCTGATAACATGAAATGGATGGCCTGTGCTAATAAAGGGTATTTCAGTCAGATCTCCACACTGGCTGACGTACAGGAAAATGTGATGAGGTATCTTCATGTTATGAGTCGTCCTAAAGTCATCGACCATGAGCATGACACGGTCTGGACGGAGGCCTACGTGGACAGCACTCTCTCCCAGGCACACAAGTCCAGAAACAAGAAGGGCCCAAGCCTGATGACCACTGTGGCCATGCCTGTGTTCAGCACCAAGAACGAGaccaAGAACCAGGGTATACTCCTAGGGGTAGTGGGCACAGACATTCCTCTTCAGGAACTCATGAAGATCATCCCTAAACACCTGCTGGGTATCCACGGTTACGCCTTTGCCATCACAAACAACGGCTACATCCTGACCCATCCGGACCTGAGGCCACTGTACCAGGAGGGCCAGAAGAGGAGGAAACCCAACTACAGCAGTGTGGACCTGTCAGAAGTGGAGTGGGAGGACAAGGATGACTTTCTGCGTAATGCCATGGTCAACAGGAAGACTGGGACATTCTCCATGGAGGTGAAGAAGACAGTGGACAAAGGGAAAAGACTCCTGAAGATGCACAATGACTATTTCTACACTGAAGTCAAGGGAACTCCCTTCAGtGTTGGAGTGGCTTTGTCTAGAGGCCATGGCAAATTCTTCTTCAGAGGAAACGTCTCAGTGGAAGCAGGGCTCCTTGACCTGGAACAGCCAGATGTTGCCTTGGCAGATGAATGGACGTATTGCAACACAGATGAGCACCATGAGCACCGCTCCCTCTCCCAGATCCAGGCCATTAAACTCTACCTGACTGGACGCAAGCCACACATCAAATGTGACAGGGAGCTGATCCAGGAGGTGTTGTTTGATGCTGTGGTCACAGCCCCACTGGAGGCCTACTGGACCGGCCTGGCCCTCAACAAGTCCGAGAACTCAGACAAAGGAGTGGAGATTGCTTACCTAGGCACACGCACTGGCCTCTCTAGAACCAGCCTGTTTGTTGTCCCAGAGCACCTATCCAATCAAGACTTCCTGACGGCAGAGGATAAGGAGGGGGTGTTCAACGCTGACCACTTCCCTCTGTGGTACAAGAGAGCAGCAGAGCAGGTTCCCGGCACCTTCGTCTACTCGATCCCCTTTGGAGGAAATGAGAATAAGAGTGTGGTTTTGGCCAGCACTGCCATACAACTGCTGGATGACAGGAAGTCGCCTATTGTTGCCTCCGTTGGGATTCAGATGAAGCTGGATTTCTTTCAGAGGAAGTTCTGGACTGCTagtagacagTGTGCCGCTCTGGATGGGAAGTGCACCATTAGCTGTGATAATGAGGACATCAAGTGTTACCTTATTGACAACAACGGATTTATTCTGGTCACAGAGGACTACTCTCAGACGGGGCTGTTCtttggagaggtggagagtgcTGTTATGAACAAGCTGCTTCTCATGGGCTCCTTCAAAAGgATCACTCTGTATGACTACCAGGCTCTCTGTAGAGTGTATGCTGGCAGCAGTGACAGCGCCCGCTCTCTATCACATCCCTTCTCCATCGTGAAATGGCTCCTGACCAAACTTGTCATTTTCCTGCTGGAGTTCAACCTTTACAGCTGGTGGCATGTTGATCTCTCAGTCAAAGCCCAAAGGTCGAGGGGAAAGACCATGATGGTGCCATGTGACACGGAGTACCCTGCATTTGTCTCTGAGCGTACCATCAAAGAGACCACGGGAAACATTGACTGTGAGGGGTGTGCCAGATCTTTTGTAATTCAGCAGATTCCCAGCAGTAATCTCTTCATGGTCGTCGTGGACAACAAGTGTGACTGCAGCTCTGCCCCCCTGGTTTCCATGGATCCCATCGAGATTATATACAATGAGTCTCTGAAATGTGATAGGCTGAAGTTTCAGAAAGACAGAAAGCGGCCAGAAACGTGTCATCCTTTTCACCCCGAGGAGAATGCCATGGAGTGTGGAGGAACAGCAGGCCTCTCTGCCCCCCTTACAGCAGCACTGCTCCCCCTACTGGCCACTTTCATTAGCAGGTGACCACACCGCCCTCGAGGCCCACCTTCCTGGACCCAACACTGGACCTAACACTGGAGAGATTGATAGACTGGCGCACCATCAAATGCTGACAACGCACAGGGAGCCTCGCCAACAAGAAGAACTTGCTCACAACTGAGTTACTTATTACCAACAGAGAGATGGACCAATTGTAAATCAATCTCCCTGACCAGCAGAGAAATAACAAATTAGACATTGTTCAAGACAAACAGAACAATATTCAAAGGGGGAAACAATATGGACTTTAGACAGAAAAAATATACCTGAGAGCAGCAATGAACGGGTTTCACAGGATGACAGAAAGGACATAAGATCAGTTGGATAACAAAGCCAGCCCTCTGGGATGTAGGAACTATCTTCCTTTATGTGCAGTCAGTGAAATCATTACCATGTTGATTTAAATCTCAGTTGGTTCACTCCACATTAGCGTTCCAAAATACTTCTACACTCTCACAGCTGTAATACGCTGACTGTGCAAGCGGCAAGACAGGATTTTACAGAATAAAAGATCCACTTTTCCCTACGTTCAGACAACA

Function

GO: NA

KEGG:

id description
K04860 CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669175 lncRNA upstream 15781 49587952 ~ 49588882 (+) True G1458992
TU1669107 lncRNA upstream 116364 49478942 ~ 49488299 (+) True cacna1da
TU1669088 lncRNA upstream 128704 49475545 ~ 49475959 (+) True G1458935
TU1669084 lncRNA upstream 133231 49470914 ~ 49471432 (+) True G1458931
TU1669080 lncRNA upstream 135102 49469281 ~ 49469561 (+) True G1458927
TU1669189 lncRNA downstream 6539 49664506 ~ 49664931 (+) True G1458998
TU1669188 lncRNA downstream 8531 49666498 ~ 49667783 (+) True G1458997
TU1669219 lncRNA downstream 11244 49669211 ~ 49669661 (+) False G1459027
TU1669222 lncRNA downstream 11244 49669211 ~ 49669740 (+) True G1459027
TU1669225 lncRNA downstream 14154 49672121 ~ 49672345 (+) True G1459030
XM_036948171.1 mRNA upstream 10163 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA upstream 10163 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA upstream 10163 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA upstream 10163 49478916 ~ 49594500 (+) False cacna1da
XM_036948176.1 mRNA upstream 10163 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 523078 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 523083 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 539136 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 564674 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 575680 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 165334 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 564307 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 666641 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 523198 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 772840 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1118562 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1236973 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 1422165 51080132 ~ 51090889 (+) False G1460249

Expression Profile