RNA id: XM_036950258.1


Basic Information

Item Value
RNA id XM_036950258.1
length 2596
RNA type mRNA
GC content 0.39
exon number 10
gene id tegt
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57305804 ~ 57329727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATGCAGCCAACCAGTAAATTGTAAACGACACCTGAGATTGTTGTTTTGACGTGATACTGAAGAGCCAGGAGACCGAGAAGCAAAACGTCGTTAGCCAGCAATGTCAATGGCAGCTACTGGAAATTTTACTCCTGTGACAGGGTCCAACCAAATCCAGACAAGATGAACGTGTTCGATCGAAGTATAAATTTTGATTCCCTTTTTAAATTTTCCCAAATCTCCCACTCCACTCAGCTGCACCTGAAGAATGTGTACTCCAGCCTGGCCCTGTGCATGTTTGTCGCTGCAGCAGGAGCCTACGTCCACGTCGTCACCAGGCTCTTCCAGGGTGGGATGTTGACCATGCTGGGCTCCCTGGCCATGATGGCTTGGCTGGCTATGACTCCCCACAGCCCTCTGACTGAGAAGAAGAGACTGGCCATCCTCTCTGGTTTTGCCTTCTTCACAGGTGTTGGTTTGGGCCCAACCATGGATTACGTCATCTCTATTAACCCAAGCATCATTGTGACAGCCTTCCTGGGGACCTCAATCATCTTTTTGTGCTTCACGCTGAGTGCCCTCTACGCCCAGCGCAGGAGCTACCTCTTCCTTGGAGGTACTCTAATGTCCGGACTGTCCATCCTGCTCCTGGTCTCTTTCCTCAACATGTTCCTGGGGTCTGTCATGTTGTTTACGgCTCACATGTACCTCGGTCTGGTCATCATGTGTGGATTTGTGCTGTTTGACACTCAACTCATCATTGAGAAGGCTGAGATGGGAGACAAAGACTACATCTGGCACTCTGTGGATCTCTTCTTGGACTTTGTGACCATCTTCAGGAAGCTCATGGTTATTCTGGCCATGAATGAGAAGCAGGACAacaggaagaaggagaagaagtaAATGTGGAGGAATGCAAGCAAATAAAAGATCTGTGACTTGGAATTGCTTCAGGAGTGCTTCTGGTGCATTCACATAACTGCTTAATTATTCAAATTATTTAGACCATGTTTGATTTTGTACTTTGATATAGTGTCTTAATTGTTAGGAATCGATTGGTTTGGAATTTGGCTTTGGCGTAAGGTTTGACGTTTTTAAAAGTTGATGTTAAGGTTTTTAGACGTCCCtgtgtctttttttttgttttgtttttttaactcCCATTTTGAAGGGATGGTGTAGTTAACTAACATACTTATTTCGATAGTTATTTTTGCATTGTCAAGTAACGATTTGAGACAATTTGTTCTTTGCTCTTCCATCTGATTAAGCAGGAAATCAATGCCTCAAATACTTTTAAAATTGCCACTTTTTATATACCAACTGATTTAAAGTACAGTATCAGTTTGGAGTTGTGCGAGGTTGTTAATTCTGTGAATATTATCTGTCCATTTGGGAATTCTGCCATTTTAAATAAGCCACACACTATATTAGTCTCAATTATGACATCACAGGCTTTTTGTTGCAATGAGTAATGAAGAACATGATGCATTTGTAAGGTGGACATTTACATGGGGTATCATTTATTAGCAAATTACAAATATTACTAGTGCTTTTACAGTACAATCCCTTTTTACTGAAATCATGCATTCGTAACATTTCCCCTTCAATGGGTAATTTACTGGTTTCATTTAAGACATTGATTCTCTCTGTGAGGCTGCTCTAACCAGTCTTTCTTTTGTAGTTTGTGCCAATAGGGGATCTTGTCAGTTTGTTTTAATAAGATGCAAATGATAGAGCAGACAGCTTTGCATCTTAAATGTTAAATATTCAGACCTTGCACGGACTCATCTATTGAAACATAAATGACATTTTTCAATGTAATTGCTGGTGGTGTCGTCTGCTATGGTGTCAAGAAAGTGATGTTTTATGGATGGACTTGTATTGAGAAGTGTAATATATTTTCCTCATAATGAATTTTGTCAAGCTTGTTCTCTTTCCACTACTAACAAAGATTCAGTGCTTGAAATAGAGGTGATCAGTAGAGAATCTGTTTCATGTAATTAGGTGACATGAAAGAAATCCCACTAATCTTCATGTTATTCCCTATGTGCGGGGGTAACAACATTTATTGAGAGAATCTCCTGTGACAGGGGTTACAGGATTAATTGAGAAGGTATGGCAGTACTGCCAAAGTCAATTAACTCACTGAATCACATGGCATAGCATCCAGTTACCAGTCAGAACGTGTCCTCATCTACCCAGGAATAGCTTGGCTAAAGGATTAGCCATTAAATGTTTCAACCTCTCGCTTGATGTTGGTAATCTAGATGACGTGAAATTTACTTTTTCTGATATGGGTCGTAGTCcttcattttaatttttttttaaccttttttagTTGAATGACATTGAACAGATAATCTGGCAGTCAAACATCCTCTGCTATGCAGCTCAAGGCTTTATTTTCTTAGAAGTGCCAATAACAATACAAGTTTACCAAACTAATCACCTGTTGCTTTTCAACTGAGGATTTTACTGTTTCAAAAATGAAATAACTGCATATCTTATACTGTGAAATTTGTTTTGCTTTTATGGGAATTACTTTTGTAATTCTGCTACATTTAATGTAATTTAAATTTGTTAAAATAAAGTTTGATTAAGTCAATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1678018 lncRNA upstream 93404 57194474 ~ 57212587 (+) True G1467054
TU1678004 lncRNA upstream 132026 57173549 ~ 57173965 (+) True G1467041
TU1677992 lncRNA upstream 158850 57146488 ~ 57147141 (+) False G1467030
TU1677993 lncRNA upstream 158850 57146513 ~ 57147141 (+) True G1467030
TU1677955 lncRNA upstream 189247 57113017 ~ 57116744 (+) True G1467001
TU1678082 lncRNA downstream 9714 57339441 ~ 57340388 (+) False G1467113
TU1678084 lncRNA downstream 10042 57339769 ~ 57340388 (+) True G1467113
TU1678092 lncRNA downstream 18737 57348464 ~ 57349023 (+) True G1467121
TU1678094 lncRNA downstream 20237 57349964 ~ 57351358 (+) True G1467123
TU1678093 lncRNA downstream 21793 57351520 ~ 57353653 (+) True G1467122
XM_036950256.1 mRNA upstream 1440 57275277 ~ 57304551 (+) True LOC110494190
XM_021569015.2 mRNA upstream 31990 57238260 ~ 57274001 (+) True LOC110494189
XM_021567394.2 mRNA upstream 80305 57176451 ~ 57225686 (+) False nramp-alpha
LOC110493228 mRNA downstream 139026 57468753 ~ 57474567 (+) False LOC110493228
XM_021569041.2 mRNA downstream 168578 57498305 ~ 57545482 (+) False LOC110494206
XM_021569042.2 mRNA downstream 168581 57498308 ~ 57545482 (+) False LOC110494206
XM_021569032.2 mRNA downstream 326222 57655949 ~ 57665568 (+) False LOC110494197
XM_021569033.2 mRNA downstream 326222 57655949 ~ 57665568 (+) True LOC110494197
TU1677994 other upstream 155648 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 158250 57146513 ~ 57147741 (+) False G1467030
TU1677978 other upstream 187105 57117702 ~ 57118886 (+) True G1467020
TU1677617 other upstream 723270 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 1085045 56219242 ~ 56220946 (+) True G1466224
TU1678132 other downstream 149070 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 168655 57498382 ~ 57548178 (+) False LOC110494206
TU1678198 other downstream 260138 57589865 ~ 57614300 (+) True G1467219
TU1680364 other downstream 1177570 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 2772165 60101892 ~ 60104007 (+) False G1470607

Expression Profile