RNA id: TU1681200


Basic Information

Item Value
RNA id TU1681200
length 340
lncRNA type sense_over
GC content 0.54
exon number 1
gene id LOC110494244
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59258342 ~ 59266492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCAACACCTGATCGCCCAGTAAGAATTATGATGATGCCACTCCTGCCGACGCCCACGCTGTCTGAAACCCAAGAAGTCCACTggctaaaatgcctacccacagggcctgccacccctcacatccagcttaagttcaaccaactgaaagctcaaatctacactctgcacccgtataagactccccaagctgagaCACTGATGACTGCCCCTACACTGaagactgggacgaagacatgatgcacctgaccccacctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccgaTCATCCTACGACCAAGGGacctccatgcacccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681199 lncRNA upstream 371 59263568 ~ 59263819 (+) False LOC110494244
TU1681198 lncRNA upstream 807 59263151 ~ 59263383 (+) False LOC110494244
TU1681195 lncRNA upstream 5634 59258342 ~ 59258556 (+) False LOC110494244
TU1681188 lncRNA upstream 14686 59249205 ~ 59249504 (+) True G1469851
TU1681187 lncRNA upstream 15641 59248265 ~ 59248549 (+) True G1469850
TU1681211 lncRNA downstream 140645 59405174 ~ 59405793 (+) True G1469871
TU1681336 lncRNA downstream 186233 59450762 ~ 59451182 (+) True G1469990
TU1681643 lncRNA downstream 231298 59495827 ~ 59496126 (+) True G1470277
TU1681656 lncRNA downstream 241505 59506034 ~ 59506337 (+) True G1470290
TU1681667 lncRNA downstream 348327 59612856 ~ 59613886 (+) True LOC118940527
XM_021567418.2 mRNA upstream 19084 59210686 ~ 59245106 (+) False LOC100136832
XM_036950330.1 mRNA downstream 18270 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA downstream 18270 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA downstream 18270 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA downstream 18270 59282799 ~ 59438025 (+) True LOC110494246
XM_021569175.2 mRNA downstream 196785 59461314 ~ 59465333 (+) True LOC110494249
TU1680364 other upstream 756305 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1649890 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1716012 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1780601 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2113847 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 837363 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1707949 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2291790 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3433974 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3445810 62710339 ~ 62711136 (+) True G1473177

Expression Profile