RNA id: XR_002469265.2


Basic Information

Item Value
RNA id XR_002469265.2
length 2062
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110494339
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63219189 ~ 63226560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGTTATCGAGTTTACCTAGTCACTGCTCAATTTGCCATGAGTGATGTGGCTAATATCGTTTACGAACATTCCCAGGTGAAGAGATCTAAACTTGATAAGGATACAAGTTCTTCCACAAACAATATATATTCAACTATCAATGTAAGTTAGTACTTGAAGCGACCAGTTGAGATAGATAGCTAACTAGCCAACTTTGCTAGCAAGCTAACAGTAGCTAAGACATTACCAAATTGGTTAGCGCTAACGTTACTTATTAGAGGGCTTGCTTTTGTGTCACAAATCACCTAGCAACCGCATCAGACGCCATGTTGGAAGACCAAAGTCAGTCTGTTGGAAGCCCTTCAACTGTTCACATGGCTGGCTGGGTTGTGCTACCACTGGAAACATTGACCATTATAGTAATTCATTTTTCTAAGGACCCAGAAAACGGAGGCAGTGGGAGAACCTATTCTACTCAGGTACAGAGAGACTTAAAAAACcctgtctgcagatgaagagGTCCCAATGACTGTCCGAGAGAATGAGGGTACATCCTTCTATACCATGGATTATAAGTGTACCTATCTGGGAGAGCTTTGTGCAATCTGGTGCCTCTACTCTTTCAAACTGCACATTACACCACAATGGGGTTGAAGACCGTGCCACCACCATTGCCTTGCACATGGGTACTGCAGTCATGCCCACTGATGAAATGCTTGTGAGAAAGCCAAGGACATCAGGCAGGAGTGGCATAAAAAACACTCTTTACCAAGGAATCCCTGGGACCCTTCCTGACATGACAGTGCTGTCTGCTGGACCAAGTTTGAGGAGCATGAGACCACAGCCTGTCATTGCCAAGGTGTTGCATGGATTGGAAGAAATGACTCTCAATTTGGTCCAGTGCTGTCATATTAGTGTCCCCTTACTGTCACCAGAGATTCTAATGCATTCAGATGCTCCTGCTTTCCCCCAACTCCCAGTAAAATAAACAGTCATTTAAACTTTGTCCCTACTTGCACTCAGTTTTACCACATGGAGAGCTTAAAGGAGCCACCATCATTGTCATCTACTATTGAGAATGGCACAGTCGAGCAGTCTGCCCATCCACTATGGAAGAAATTAGGAAACCACGTGTGACTGCTACCCAGTTTAGTGAGGCATGCCACTTGCGTGGGGTGTCATCTCGCCATGCCCTAGCCATGAGAATGCTTAAAAGTGAGCGGCAAACCGAAGCTATGAGAAAGGGGTTTGAGCCAGAGGTTCTATAGAACTACTCTGAATTGTTTAATGTCTCGGTCAAACCTTGTGATTTCATTGTGAACCCAGATGCACCCTATCTTGGGGCATACCCTGACGGGAAAGTTTATGACCCTTCTGCAGCGCCACCCTTCAGGCTAGCCGAGATCAAGTGCCCTGATGTTGAGTGTAACTGATGCGAAGCACATTAAGTTTGTCAATGGCCCGGCCAAGCTCAATCACAGCCACAAATATCACTGGCAAGTCCAGGGCCAACTGGCTGTAACCGGTTTAGATTGATGCGACTTTGTTACAAGCACTAGAAGTGatattacagtagagagagtTGAGAGATGATGCTTTGATAGCAGAGATGAGAGAAACTTGACTACTTCTACACCTACATGGATGTGTACTTTAAGATGTAGTGTAGCAGGTGAGCCAATCCCACTTGGCAGGCCACTGTAACATTGTTGCCCAAGGCAATGTACATGTAATGTATTTAACTAATCAAAATTGTATGTAGAGTAAATTATTTGAATGAATGAATTGTGTGATCTTGTTTGTCTATcacatgtggctcagttggttgaACATGACGTTTGCaatgctagggttgtgggtttgattcccacagggggACCAGTACGTCGTGAAagaatgaaaatgtatgcactcactactggaagtcactggataagagcatctgctaaatgactaaaatgtaaatgtaagcaATTATTCAACTAATTGAATTGTTTGTTATTTTATGACCGGCTTAATATAACAGGTCACTGAATgaataatcaaatgtatttattgaatAAAATCTTTAAATTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685875 lncRNA upstream 18009 63200146 ~ 63201180 (+) True LOC110494337
TU1685858 lncRNA upstream 84948 63133763 ~ 63134241 (+) True G1474113
TU1685798 lncRNA upstream 183457 63035341 ~ 63035732 (+) True G1474055
TU1685765 lncRNA upstream 236800 62981211 ~ 62982389 (+) False G1474026
TU1685921 lncRNA downstream 18451 63245011 ~ 63245267 (+) True G1474175
TU1685922 lncRNA downstream 18813 63245373 ~ 63245598 (+) True G1474176
TU1685927 lncRNA downstream 22271 63248831 ~ 63249046 (+) True G1474181
TU1685945 lncRNA downstream 127797 63354357 ~ 63354689 (+) True G1474199
TU1685946 lncRNA downstream 128158 63354718 ~ 63354917 (+) True G1474200
XM_021569303.2 mRNA upstream 17985 63196079 ~ 63201204 (+) False LOC110494337
XM_021569304.2 mRNA upstream 24522 63188495 ~ 63194667 (+) True pfdn5
XM_021569300.2 mRNA upstream 30768 63159063 ~ 63188421 (+) False espl1
XM_021569299.2 mRNA upstream 30768 63159173 ~ 63188421 (+) True espl1
XM_021569298.2 mRNA upstream 78148 63124888 ~ 63141041 (+) True itgb7
XM_036950417.1 mRNA downstream 5837 63232397 ~ 63238751 (+) False LOC110494340
XM_021569305.2 mRNA downstream 6185 63232745 ~ 63238751 (+) True LOC110494340
XM_021569309.2 mRNA downstream 23004 63249564 ~ 63265504 (+) False LOC110494341
XM_021569307.2 mRNA downstream 23004 63249564 ~ 63265507 (+) False LOC110494341
XM_021569308.2 mRNA downstream 23004 63249564 ~ 63265508 (+) False LOC110494341
TU1685904 other upstream 1595 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 508053 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 520374 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1662151 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2220126 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 431884 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 457530 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1336814 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1381694 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1528761 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile