RNA id: TU1669849


Basic Information

Item Value
RNA id TU1669849
length 204
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1459582
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50423815 ~ 50424018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacacacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacgatgtgagcaaatgaggtaaaggcaaaaaaaaacgccatggtggcaaagtaaatacaatatagcaagtaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669842 lncRNA upstream 19185 50404376 ~ 50404630 (+) True G1459575
TU1669833 lncRNA upstream 32115 50391267 ~ 50391700 (+) True G1459570
TU1669824 lncRNA upstream 42810 50380774 ~ 50381005 (+) True G1459568
TU1669818 lncRNA upstream 54526 50369049 ~ 50369289 (+) True G1459562
TU1669769 lncRNA upstream 65025 50297463 ~ 50358790 (+) True G1459518
TU1669850 lncRNA downstream 367 50424385 ~ 50424786 (+) True G1459583
TU1669853 lncRNA downstream 11801 50435819 ~ 50437567 (+) True atxn7l2a
TU1669887 lncRNA downstream 28762 50452780 ~ 50453450 (+) True G1459618
TU1669888 lncRNA downstream 29465 50453483 ~ 50453775 (+) True G1459619
TU1669889 lncRNA downstream 30074 50454092 ~ 50454584 (+) True G1459620
XM_021570334.2 mRNA upstream 950 50408676 ~ 50422865 (+) True sypl2a
XM_021570316.2 mRNA upstream 20951 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA upstream 20951 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA upstream 20951 50400347 ~ 50402864 (+) True LOC110494971
XM_021570341.2 mRNA upstream 36873 50382072 ~ 50386942 (+) True LOC110494986
XM_036948187.1 mRNA downstream 3127 50427145 ~ 50437612 (+) False atxn7l2a
XM_036948188.1 mRNA downstream 3149 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948189.1 mRNA downstream 3149 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948190.1 mRNA downstream 3156 50427174 ~ 50437612 (+) False atxn7l2a
XM_021570335.2 mRNA downstream 14652 50438670 ~ 50445648 (+) True LOC110494981
TU1669722 other upstream 240119 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 984486 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1383459 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1485793 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 6789 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 352511 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 470922 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 656114 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3749996 54174014 ~ 54189617 (+) True G1464092

Expression Profile