Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049597 |
| length | 1407 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_025064 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 8825382 ~ 8836722 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141222-83 | Predicted to enable GTP binding activity and GTPase activity. Orthologous to several human genes including GBP1 (guanylate binding protein 1); GBP2 (guanylate binding protein 2); and GBP3 (guanylate binding protein 3). |
| ensembl_id | ENSDART00000168088 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052322 | lncRNA | upstream | 12636 | 8814055 ~ 8814377 (+) | True | XLOC_025063 |
| TCONS_00052321 | lncRNA | upstream | 20264 | 8806318 ~ 8806749 (+) | True | XLOC_025062 |
| TCONS_00049590 | lncRNA | upstream | 724322 | 8094011 ~ 8102691 (+) | True | XLOC_025058 |
| TCONS_00049587 | lncRNA | upstream | 1032153 | 7782563 ~ 7794860 (+) | False | XLOC_025056 |
| TCONS_00052320 | lncRNA | upstream | 1073839 | 7714364 ~ 7753174 (+) | True | XLOC_025055 |
| TCONS_00052593 | lncRNA | downstream | 11045 | 8847767 ~ 8849729 (+) | True | XLOC_025065 |
| TCONS_00052323 | lncRNA | downstream | 38234 | 8874956 ~ 8875830 (+) | True | XLOC_025066 |
| TCONS_00052324 | lncRNA | downstream | 141510 | 8978232 ~ 8978689 (+) | True | XLOC_025067 |
| TCONS_00052325 | lncRNA | downstream | 142014 | 8978736 ~ 8980215 (+) | True | XLOC_025068 |
| TCONS_00052594 | lncRNA | downstream | 195483 | 9032205 ~ 9033012 (+) | True | XLOC_025071 |
| TCONS_00049592 | mRNA | upstream | 529763 | 8290595 ~ 8297250 (+) | False | XLOC_025060 |
| TCONS_00049593 | mRNA | upstream | 530200 | 8295335 ~ 8296813 (+) | True | XLOC_025060 |
| TCONS_00049591 | mRNA | upstream | 599804 | 8224622 ~ 8227209 (+) | True | XLOC_025059 |
| TCONS_00049589 | mRNA | upstream | 992507 | 7822948 ~ 7834506 (+) | True | XLOC_025057 |
| TCONS_00049588 | mRNA | upstream | 1007173 | 7808459 ~ 7819840 (+) | True | XLOC_025056 |
| TCONS_00049610 | mRNA | downstream | 235084 | 9071806 ~ 9091825 (+) | False | XLOC_025082 |
| TCONS_00049611 | mRNA | downstream | 241185 | 9077907 ~ 9088394 (+) | False | XLOC_025082 |
| TCONS_00049613 | mRNA | downstream | 245533 | 9082255 ~ 9083907 (+) | False | XLOC_025082 |
| TCONS_00049612 | mRNA | downstream | 245533 | 9082255 ~ 9083907 (+) | False | XLOC_025082 |
| TCONS_00049614 | mRNA | downstream | 245648 | 9082370 ~ 9083907 (+) | True | XLOC_025082 |
| TCONS_00049594 | other | upstream | 437342 | 8389555 ~ 8389671 (+) | True | XLOC_025061 |
| TCONS_00049575 | other | upstream | 2456211 | 6360881 ~ 6370802 (+) | True | XLOC_025032 |
| TCONS_00049569 | other | upstream | 2788675 | 6038203 ~ 6038338 (+) | True | XLOC_025028 |
| TCONS_00049552 | other | upstream | 4556467 | 4269354 ~ 4270546 (+) | True | XLOC_025004 |
| TCONS_00049516 | other | upstream | 7023668 | 1788195 ~ 1803345 (+) | True | XLOC_024964 |
| TCONS_00049598 | other | downstream | 191772 | 9028494 ~ 9028642 (+) | True | XLOC_025069 |
| TCONS_00049599 | other | downstream | 194648 | 9031370 ~ 9031520 (+) | True | XLOC_025070 |
| TCONS_00049600 | other | downstream | 198954 | 9035676 ~ 9035776 (+) | True | XLOC_025072 |
| TCONS_00049601 | other | downstream | 199468 | 9036190 ~ 9036296 (+) | True | XLOC_025073 |
| TCONS_00049602 | other | downstream | 199995 | 9036717 ~ 9036823 (+) | True | XLOC_025074 |
