RNA id: TCONS_00000005


Basic Information

Item Value
RNA id TCONS_00000005
length 455
lncRNA type retained_intron
GC content 0.65
exon number 2
gene id XLOC_000001
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11822 ~ 16373 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACACCTGGACGTGCAGCAGCTCCACCAGAGCACACCTGATGAAGATGAGGAGGATGAAGGTGATGATGTAATCGCTCAGGCTGCTGTGTatGTGGAGCCTGCAGTTCGGGTGAACGCGTGGATGGACTCTGTGTCTCCACCCTTGGCCGCTCCTCCCCCCTCCGCTCCTCCCCCCGCTGTGGCTGCAGACGGGCTGCTCCTGCAGGATCTGGAGGCCCCGGGGCCGCTGGCGTCTGAATCTGCCGCTCCTCCGGCTTCAGCTCCTGACAGCGGAGAGGAGGAGTTTGAGGACTCTCTGGCTCCTCCCACATCCACTCAGCACCGTGCCCCAGGGGAGGAGCCAGTGTGTGGGGGCGTGTCCTCAGAGCATCAGCAGTGTGAGCCGCAGGACGCCGCCGTGAGGATCCAGAGCTGGTGGAGGGGCCAGTGGACTCGCCAGCGCCACCCGCAGGCC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-031030-11 Orthologous to human CEP97 (centrosomal protein 97).

Ensembl:

ensembl_id ENSDART00000171631

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000007 lncRNA downstream 3653 18716 ~ 19963 (+) False XLOC_000002
TCONS_00003000 lncRNA downstream 3653 18716 ~ 20331 (+) False XLOC_000002
TCONS_00000009 lncRNA downstream 3684 18747 ~ 20331 (+) False XLOC_000002
TCONS_00000013 lncRNA downstream 12751 27814 ~ 31905 (+) False XLOC_000004
TCONS_00003001 lncRNA downstream 12751 27814 ~ 32353 (+) False XLOC_000004
TCONS_00000002 mRNA upstream 285 11992 ~ 14058 (+) False XLOC_000001
TCONS_00000008 mRNA downstream 3653 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000010 mRNA downstream 3723 18786 ~ 23173 (+) True XLOC_000002
TCONS_00000011 mRNA downstream 10522 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000012 mRNA downstream 12627 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000016 mRNA downstream 21489 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000003 other upstream 1086 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 244977 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 498950 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 522526 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 561381 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1203628 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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