RNA id: TU1930379


Basic Information

Item Value
RNA id TU1930379
length 218
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1687674
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34325367 ~ 34325584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTCCGGCattgtttatatatatacagtggggcaaaaaagtatttaggcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcacctatgacagacaaaatgagggaaaaaaatccagaaaatcacattgtaggatttttaatacattcatttgcaaattatggtggaaaataagtattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930327 lncRNA upstream 112757 34212383 ~ 34212610 (+) True G1687628
TU1930326 lncRNA upstream 113458 34211533 ~ 34211909 (+) True G1687627
TU1930277 lncRNA upstream 304611 34020460 ~ 34020756 (+) True G1687581
TU1930212 lncRNA upstream 355321 33967099 ~ 33970046 (+) False G1687545
TU1930381 lncRNA downstream 752 34326336 ~ 34326687 (+) True G1687676
TU1930384 lncRNA downstream 3358 34328942 ~ 34329146 (+) True G1687679
TU1930386 lncRNA downstream 6235 34331819 ~ 34332148 (+) True G1687681
TU1930401 lncRNA downstream 25046 34350630 ~ 34354756 (+) True hmgcll1
TU1930437 lncRNA downstream 85234 34410818 ~ 34411022 (+) True G1687730
XM_021576472.2 mRNA upstream 13217 34273867 ~ 34312150 (+) True bmp5
XM_036956227.1 mRNA upstream 53819 34225873 ~ 34271548 (+) False col21a1
XM_036956228.1 mRNA upstream 53819 34225873 ~ 34271548 (+) False col21a1
XM_036956229.1 mRNA upstream 53819 34225873 ~ 34271548 (+) False col21a1
XM_036956231.1 mRNA upstream 53819 34225875 ~ 34271548 (+) False col21a1
XM_021576477.2 mRNA downstream 21570 34347154 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA downstream 24901 34350485 ~ 34354777 (+) False hmgcll1
XM_021576476.2 mRNA downstream 24935 34350519 ~ 34379366 (+) False hmgcll1
XM_036956236.1 mRNA downstream 25326 34350910 ~ 34354777 (+) False hmgcll1
XR_005037989.1 mRNA downstream 173447 34499031 ~ 34503666 (+) True LOC118942064
TU1929194 other upstream 1140091 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1663719 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4748809 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4748809 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4867446 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 253 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1056125 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1056125 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1355783 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1375636 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile