RNA id: XM_021577894.2


Basic Information

Item Value
RNA id XM_021577894.2
length 2295
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110500500
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43268610 ~ 43278166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAATAGCCGAAATCGAAAGTGAAGCCGGTTCAACGTCGTTGTTTTTCCTTAGAGGTGACAACTCGAAGGGACGCTTTTCGGCTACAAGAATACACGAATAAATCGGTCATTAAGTGGGTGTTCTATGGCGTTTATTTGGACTGTGAAACCTACTGTAAACAATGGAGCTGAACATTTCAACAAGACACTGCCGAGGCTCGAAAGCATACTTCCCACCCCAGGACCAGAACACCATGGCCTGTATAATCAAGGGGCAACGTGTTATTTGAACAGTGTGCTGCAGGTCCTCTTCATGACTAAAGAATTCAGAGAGGCTGTTGAAAGtaataGGCCTCCTCAAGAAGAAGACACTGTTGATCTTCAGCTGAAAAAGTTGTTTACAACTTTACGTGAAATTGAAACTAACACAAAGGGCATCTCATCAATACTAGGCATTGATGATGTATACATGCAATGTGATGCGGCTGAGTATTTTGAGAAGATTTTAGGCATGGTCAATCCTGAAGTGTCAAAGATCTTCAAAGGACAATTGAGGCACATCACTACCTGTTTAGGAAAACATGTGATGAGTGATGGATTTGGTCCATTTTGGACACTGCCCCTCTCAATAGCAGATCCCTCTGACTCTTACAAAACCTACAGTGTGAAAGATGGCTTTAAGGAGTTCTTCAAGTCTACATCTGTCACTGGGGAAAACCAGATGTACTGTGATGAATGTGAAAAGAAATTAGATGCAACCATTGAATGCAAGATGGAATATCACCCAGAAATTCTTACTCTGCTCCTCAAGCGGTTTGAATTTGACTACTACAGCATGTCATATGTCAAAATCAACTGCTGTGTGGATGTGCCTCACACACTCCAGACAGAGAAATGTGAATATGAACTCTATGCGATTGTGGACCATTTCGGAAGTCTTGGATGTGGACACTACACTGCTAAGATCAAGTCCTTTGAAGATCATAACTGGTATGAGTTCAATGACTCATACGTTACAAAGGTCCAACCAGCTCCACTGATTGACAGTTCTTGGAGTGCTTATCTACTGGTGTACAGGAAATCACATGCTTCAGATCGTGAGAACCATGGAACCAACCAAGTTCGCGGTTCACTCCGAGAGGATGGGGTTACAGAGGTTGGAGAGCATGTTCAAAAAAAGACAAGTGGAGATGATCATCACGGGGTTGATGGAAATAAAGGACAGGGACCACATGTTGCGGTCAGAAGAAAGGAAAATGTAGGAAAGGCAGATACAGGAAGAGATGACGATTTGatagagagaagacaggagacagatgcacacaggagagaggatgtggaTGGAACAAGACGGTATGATGTGGTTTTGATAACAGAGAAACAGCAGACTCCAGAGATATGTCAGAAATTAGGCAGACTCCGTGTGTTTCATCATGACTATATTTTGCCCATCAGGTGTTCATCATGGAAAGAAGAGGATAATGCTGTGGAGAAAATAGAACAGGATGATGTAGTGAGAAGGGTAGATAAGGACAGAGAGGGTGTCGTGGTAAAGGGAGAAACGCATCTCGGTGAGACAAAGACAAGTCTGACCAAGTACGGAGAGTCTTCCAGCTCTACAAATAGGTGTGAGACCATCCCATCACACCAAGAGTTCAATGAAGTCAGAAGGAAAGAAATGCAAAGAAGAAAGGACGAAAAGGATGCCAATTACAGTCAGTTCCTTGCTAACGTGCAGGACAACAAGCTGAGAGAGGTTCTTGAGAGGCAGAAGAAGAACAAGGCTCACTGTGGTTTCAGGCGCTTCTGGGGTGTCCGTGGCAAGTACACCAAGGCCATCGGTCGCAGTGGTCGCGTCGTTGGTATGTCTAAGAAGAAGTAAACTATGTCCCAACTCCCCATGTGTCAATAAATGCCACAGTTCACACACAAAAACGATGGAAGAAGAATGAAAAGAGAAGTGTAGAAGAGATGGAGCTTTTGAGTAAAGACAAGAAAAGAAGAAAGAGGAACttcagggaaggagaggagggaatggAAAAGAAGTGAGATGGCTAAATTTGAAGTTTCTGTTTTGTCCAATTTGAAAACTGGAAGAGGAATGTATGGAATATGGAATATATTCTGATTTTGGGAACAATTCTGCCTTTAACCCTGTATTATCTTTTTATAAATGTTTAACAACTAACTTTAACTAAAGTCCTGTTATTAGCCTCTTTTATGTTCAACATCGTTCATCACTTTACTCAGATGACTTTCTTGTCCAAGTGTTTACAAAGTACTGTATATTAAAGATGCTTTGTATGTAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993024 lncRNA upstream 65984 43202422 ~ 43202626 (+) True G1740301
TU1993022 lncRNA upstream 68321 43199907 ~ 43200289 (+) True G1740299
TU1992989 lncRNA upstream 97021 43171376 ~ 43171589 (+) True G1740276
TU1992987 lncRNA upstream 99070 43169263 ~ 43169540 (+) True G1740274
TU1992904 lncRNA upstream 106918 43158860 ~ 43161692 (+) True LOC110500494
TU1993068 lncRNA downstream 50229 43328395 ~ 43328602 (+) True G1740335
TU1993069 lncRNA downstream 50737 43328903 ~ 43329165 (+) True G1740336
TU1993070 lncRNA downstream 51904 43330070 ~ 43330342 (+) True G1740337
TU1993072 lncRNA downstream 53964 43332130 ~ 43332567 (+) True G1740339
TU1993073 lncRNA downstream 55310 43333476 ~ 43333693 (+) True G1740340
XR_002470116.2 mRNA upstream 468 43267057 ~ 43268142 (+) False LOC110500499
XM_021577892.2 mRNA upstream 23503 43234646 ~ 43245107 (+) True LOC110500497
XM_036956512.1 mRNA upstream 36402 43222339 ~ 43232208 (+) True LOC118942803
XM_021577891.2 mRNA upstream 48928 43203539 ~ 43219682 (+) True LOC110500496
LOC110500494 mRNA upstream 106917 43158857 ~ 43161693 (+) False LOC110500494
XM_021577896.2 mRNA downstream 9024 43287190 ~ 43299305 (+) True LOC110500501
XR_005038607.1 mRNA downstream 26927 43305093 ~ 43310941 (+) False LOC110500503
XM_021577900.2 mRNA downstream 26930 43305096 ~ 43323874 (+) False LOC110500503
XM_021577897.2 mRNA downstream 26932 43305098 ~ 43310973 (+) False LOC110500503
XM_021577898.2 mRNA downstream 26932 43305098 ~ 43310973 (+) False LOC110500503
TU1993035 other upstream 467 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other upstream 467 43267331 ~ 43268143 (+) True LOC110500499
TU1992021 other upstream 766253 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 913283 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 980110 42285056 ~ 42288500 (+) True cxcl8c
TU1993101 other downstream 111023 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 168884 43447050 ~ 43451167 (+) False G1740398
TU1993149 other downstream 172256 43450422 ~ 43451167 (+) True G1740398
TU1993165 other downstream 191652 43469818 ~ 43470325 (+) True G1740412
TU1993210 other downstream 246570 43524736 ~ 43526726 (+) True G1740453

Expression Profile