RNA id: XM_036958279.1


Basic Information

Item Value
RNA id XM_036958279.1
length 3995
RNA type mRNA
GC content 0.51
exon number 17
gene id lrch4
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58084350 ~ 58141118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCCGCCTTGGGTCCATTCATCTCGGTTGAGATATGGGTGTTGCCCCTGTCAATCAAACTCCTTCTCGTCGAAGGCTCTCTCACTGCTCCTCCGCTTCCTGGCCTCGCCGCACCTCTTTCTGACAGCTACTAGTACCGCTTTCTCGAAGACAACTGGACCGTAGAGAATCCTCGTTGTGGAAGATTAAGAAATagcctttttttttgttttgtcggATTTATTCATTGTCCCGACTTCGAAAGTTGTTTATCGGACGAGAGACGGATGGTTTTGGAAGTCGTTCTGAGGGATACGAAAGTGTAAAGGAAggttttattttcttttttttgtctttttttagaCCCTAACACAGTAACATAAAGAGACATATCTACTGTTCATGGCTGCTGGGGAAGGTGCCCAGCTGCCGGCAACAATAGCGGCCAGCCGGTGCGTGGAGAAGTCGCTCGAGGAAGCTACCGGGAGCGGTGCTCTGAACTTGTCGAACCGTAAATTGAAAGAGTTTCCCCGAACCGCCCGGAACTATGACTTGTCCGATATTACGACAGCCGACCTTTCTAAGAACCGTCTGTGCGAGCTGCCAGAGGAGCTGTGCCAGTTCATCTCCTTGGAGACGCTCAGCTTGTACCACAACTGTGTTCGCTCCCTCACCCCCGACCTCTGTCACCTACAGGCTCTCACCTACCTCAACCTCAGCCGTAACCTCCTCTCCAGCCTGCCCCCCTCGATGTGTCAGCTCCCCCTCCTGAGAGTCCTGATCGTCAGCAACAACAAGCTGTCAGCCCTGCCCACCTCCATACATACCCTCACGCACCTCCGACAGCTGGATGTGAGTTGTAATGGCCTGCAGTGTTTGCCTGTGGAGCTGGGTCAGCTGGAGTGTCTGAGAGACCTCAACTTGAGGCGGAACCAGCTCACCACGCTgccagaggagTTGTCCGAGTTACCCCTGGTCCGGTTAGACGTCTCCTGTAACCACATCTCCCACGTGCCCGTGTGTTACCGCCACCTGCGTCAACTCCAGACCATAGTCTTGGACAACAACCCCCTGCAGCAACCGCCTGCCCAGATCTGCTCTAAGGGGAAGTACCACATCTTCAAGTTCCTCAACATTGTGGCCTGCAAGAGGAGCCAGGAGGAGCTGGAGAGAGCCCTGAGACCTACAGGGTTTAATAGCTGTCTGTCGGACCATGAGCTGTTCTCAGGTCAGTTTGGAGGTTTGGACTCTGGCTTCAACAGTGTGGACAGCGGCAGCAAGAGATGGTCTGGGAACGAGTCTGCAGATGACTTCTCAGAGCGGTCCCTGCGTATGGCTGAGCTCACCAGAGACCAGAGGAAcctggaggaagaggtggaggacgACTCTTCCCTCACAGAGACCCCAGACACGGTGAATGGGGAGGCCAAGCGGGTGGATGTCATAGCGTCACCGAGGAGCGTCACCGAGGAGAAAGAAGACTGCAGGACGAAtcgtccctctccccctctcacagcGCCCCCGCAGGAGAACACAGCGGAATCCTCACCACCACCCCAAACACAAGACTCTTCTAGAagcagTGTGGAGGTAGGAGGGGGGCCGTCACACCCGTCCCCCTCCAGTCCcaccctggaggagaggaggagaccagGTACCCTGCTCATctggcaggagagagagcgaaTTCATCAGCAGAGAGACAACACGGCCAGAGACAATGGTTTACTGAAGATTACAACGGCCAAAACAGGAAGTAATGTGGCGACGCTGTCACAGACAGGAAGTAGCTCGAGTGGTAGCTCACCAGAGAACAACCACTCCCAGAACGGGCTCAGACAACGATGTGCGAGTGCAGATCAGATGTCACTGTCTCAAACAGCACCTGTTCAGCGCTCTGTTAGCCGATCAGaCGTTCCGTCGTCTCCCAAGGCGTCGTCCCCTCCAGGCCTGAGTCAGaaacccaacagtttcctgttccGCACCTCGTCCCGCTGCAGCGTCAAGAGTCAGTTCTCCATCTCAGGCTCCACACAGAGTCTGGTGGAGGCAGGCCGCTCTGAGTCTCGCTCCGTGTTGAGGCCAGATGTAGTACAGCTACGTAAGACTCTGGAGTCGAGGTTAAAGACCGTCCTGCCAGAGGATCTAGGTGAGGCGCTGTCCAATGGAACGGTCCTCTGCCAGCTGGCCAATCACGTGCGGCCTCGCGCTGTGTCCATCATCCACATTCCCTCCCCAGCAGTGcCAAAGCTGAGCTCGGCCAAGTGTCGTCTCAACGTGGAGAACTTCATCTCAGCCTGTCGTaggctgggggtccctgagacggaggtgtgtgtgttgtctgatgTGTATCTCTGTAAGCTGCCTGCTGTGCTGCGCTGTGTGGAGGCCCTGGTGAAATGTGAGGTAGAGGGGGACAGCCCCTACAGCCCCTACTCCTCACTGCTCTCAGAGGGCTTCTTGGTCTTCTACAGCCTGGTCATGATCCTGCTGTACACAATGTACTACCACCTGGTCTCATAGATACTGAGCACTCTgttctacactactaccacctgGTCTCatagatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagctctcggACTGATGTGAATTTGACCACCTAATGCGAACATTCACAGACAACCTGGACTTAAATAATCCACCATGatttcataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgtcctgGCATGAGGTATGCAGAGTGAGAGACGAGCCTCACAACACAGGAAGGACTGTCAGCTGCCCCCTCCAGCCTCACAGCTGCTGTCAAAGACGTACCCAACGTgacaacagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacggccacagCAGAACACACAGTGTGTACGTACAACAGCTGGTGTGGTTGAGCACAACATGGAACCATGTGATTCATAAAACAACCACTGAAATCATGTCCTTTAAAGTTGAGAGATTGGCTCTGGCCCATATTGACGTCGTCTGACATACCCTTTAGATAAGAGGGCCCTTTTGAACATCACAACCTCTGTGAATAATTAGCAGAGAAATACATTTTAGTTAAACTGTTAGTCACATTTCTATTTTTAAAGGGCTTCCCTACATGACTGCTGTTTCCCCTCTAATGCAcagcatgtctctgtctctgtctgacgatgtctctgtctctctgtctgacgatgtctctgtctctctgtctgacgatgtctctgtctctctgtctctgacgaTGTCCTGTCTTCAGTGAGGGAAAACGCCCTGTACTCAGAGAATTGGGAACACACGTTGTAACCTTTTGAGGAGATTACAAAACAGGAAAGGACAACGTTTATCAAATAAAATAAGAGGACATTTTGTGACCTAGACTCCCAACATTTTGCTGAAAGGATTAAGACATTATTCTCATGGAAGCCATTTTGGGGGGGAAATGAGACCAATCATTGGTGCCTGTTATATCTGCCAGTAAGAGTACTCACTGACCAACGCCTTCCACTGGTTTCTGCCTGCCATGTCTGACCGTGACCACCAGGGAGCGGTGTTGCTACACACTACATTACACCGACTGCTATCCCCGATGCTTTTTTTTAAAACCTGATGGTACAGAAACATTTCCAAGCTTGTAATGATTTATTTTacttatttttgttgtttgtttggtCACCGGCTTAACATGCTTCATGTTTGTAAAAATGTAAACAACTAATTAAattatttttgtcttatttatatattttttttaaatgtgttttttattttctgTTTGTTGCAGTGCTTGGGGGAAAGAGCATTGGCCTCATAGATAAAAGCTAACTGAAATCAATTGGTTTAATTCGCTTCCTGATTGAGTCAGATTACTGGTTGTAGCCTTGTTCAATGTTCAATGGGACCACTTCTCCAAAGCTCGCACGAATAAACATTTAGATAAAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2011597 lncRNA upstream 31348 58051504 ~ 58053003 (+) True G1756845
TU2011591 lncRNA upstream 39879 58044105 ~ 58044472 (+) True G1756839
TU2011554 lncRNA upstream 52467 58029277 ~ 58031884 (+) False G1756807
TU2011551 lncRNA upstream 52467 58030124 ~ 58031884 (+) False G1756807
TU2011553 lncRNA upstream 52467 58030124 ~ 58031884 (+) False G1756807
TU2011675 lncRNA downstream 37246 58175470 ~ 58175866 (+) True G1756903
TU2011679 lncRNA downstream 51710 58189934 ~ 58190296 (+) True G1756906
TU2011739 lncRNA downstream 131314 58269538 ~ 58270714 (+) True G1756960
TU2011754 lncRNA downstream 154714 58292938 ~ 58293268 (+) True G1756975
TU2011786 lncRNA downstream 179550 58317774 ~ 58318182 (+) True G1756997
XM_036958276.1 mRNA upstream 63906 57996628 ~ 58020445 (+) False pcolceb
XM_036958275.1 mRNA upstream 63906 57996629 ~ 58020445 (+) True pcolceb
XM_021578298.2 mRNA upstream 98193 57970310 ~ 57986158 (+) False per1b
XM_021578319.2 mRNA downstream 267012 58405236 ~ 58411726 (+) False rwdd
XM_036958286.1 mRNA downstream 273718 58411942 ~ 58441271 (+) False LOC110500903
XM_021578316.2 mRNA downstream 318472 58456696 ~ 58464184 (+) True si:ch211-212k18.7
XM_036958289.1 mRNA downstream 374484 58512708 ~ 58523630 (+) False LOC110500780
XM_021578314.2 mRNA downstream 374487 58512711 ~ 58523630 (+) True LOC110500780
TU2011526 other upstream 156107 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 1289777 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 1696729 56386407 ~ 56387622 (+) True G1755158
TU2007604 other upstream 2493211 55590605 ~ 55591140 (+) True LOC110500754
TU2007279 other upstream 3072673 55008434 ~ 55011678 (+) True G1753100
TU2012159 other downstream 267060 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 544913 58683137 ~ 58686523 (+) True G1757578
TU2013967 other downstream 2183991 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 2183991 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 2184290 60322514 ~ 60326620 (+) True G1758801

Expression Profile