RNA id: XM_021578298.2


Basic Information

Item Value
RNA id XM_021578298.2
length 5944
RNA type mRNA
GC content 0.54
exon number 11
gene id per1b
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 57970308 ~ 57986158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGTGTACCTATGCGTGTAGACTGACATGGGCGAAGCgacttgtgtgtgtggtacaaCAGAACTGAAACGAAGAAGGGGAGAGAAGTCCAGTATCTCTATGGTCCATACCTTTTGAATTCAGACATTACTTATTTACAAGGACTATTCGAGAACAGTATCGAAACAAGAGAAATTAAAGGTGGCCTGTAGCACAGAGAGTAAAACCAACACGACACAGAGCAGTGGAGACGCCAAGGGAGAAGTAGCGACCTGTTATTTTCTCTGCTTCCCGGTCTTTTCTTGAGCGAAAGCAGCAGCATCTCTCGATCAGTCCATCTGTGAGAGTCACGTTGGTCTGCTTTGTTAGCGGAATATTATCTCTCCCTTCTGCGGGTGGAAAACCGCGGGTGGATCCCTCGCCCTTTAGCAATTGACCGTAGGGTTTCAGCGCAAACTaatattacttttttttttcttcaacatTTTCAGGAGAAACAATGTTTTCTCTCCTTAGTGTTttatcaaccaatcaaccaatcacgATACACAACTGCAGTCACGCTAGTCCCACCTAATCAACTGGAAAAGAGCATTTTTCTAGAATTATCTTACATTACACTTGGTGAGAGAGCTTTGTCTCAACCAAGCCTAACCAGCCTCATCCTAACCTATTATGAGTTACGACGACTCAAACTCCGCCCCTGGCGATGACACTTGGGGGCGAGTGGGAAGCAccaatgaagaagaggaggaggcggGAACAGGATTGAGCTCCCCCGGCAGCAACAACAACCATGGCAGCCAATCGGGAACTTCGGACTTGGCCAATCGGGTGCGAGGATCCTCTCCAAGTGGGTCCGGCTCCGGTGGCTCGTCTGGGGGGGACCAGAGGGGTCCCAGCTCAGATGACGGGGAGAGGGAGTCGAGTGAGGGAGGAGGCGGGTCCAGGGGACATCAGTCCAGAAGTTCCCACTGTTCCTCCAGCCAGAAGGACTCGGGCATGATGCTGGAGAACACCGAGAGCAACAAGAGCTCTCAGTCCCAGAGCCCGTCTCCCCCCAGCAGTTCTCTGGCCTACAGCCTGCTGTCAGCCAGCTCAGAGCAGGACCCTCTTTCCACCTCCGGCTGCAGCAGCAACGAGCAGCACCAGACGGCCCGCGTCCAGACCCAGAAGGAGATGCTGAAAGCCCTGAAGGAGCTCAAGGTTCGCCTGCCGGCCGAGTGCAAGGGCAAAGGTCGCTCCAGCACCCTGGACGCCCTCCAGTACGCCCTGAACTGTGTGAAGCAGGTGCGAGCCAACCAGGAGTACTACCACCAGTGGAGTGTGGAGGAGTGTCACGGCTGCAGCCTGGATCTGTCTGCACATACCACTGAGGAGCTGGACAACATCGCCTCAGAGTACACCCTCAAAAATACAGACACCTTTTCCATGGCGGTGTCCTTCCTGACAGGCAAAGTGGTGTACATCTCCCCCCAGGGCTCGTCCCTGCTGCGCTGCAAGCCAGAGAGGCTCCAAGGGGCCATCTTCTCCGAACTGCTGGCTCCCCAAGACGTCAGCACCTTCTACAGCAGCACTGCCCCCTGCCGCCTGCCCGCCTGGGCCACCTGCATGGGCTCTGTGTCCCCACGGACAGACTGCCACCAGGGGAAGTCCATGTTCTGTCGCATCAGTGCCGACCGGGCGCAGGGAGGCGAGATCAAATACTACCCCTTCCGCATGACCCCCTATCAGCTAACCCTGAGGGACTTAGACACGTCAGACCCCCAGCCCTGCTGCCTGCTCATCTCTGAGCGGGTACAGTCCGGATACGAAGCTCCCAGGATCCCTGCTGACAAGCGGATCTTTTCCACCAGTCACACTCCCAGCTGTCTCTTCCAGGAAGTAGATGAAAGGGCTGTGCCGTTGTTGGGCTACCTTCCCCAGGACCTGGTGGGAAGCCCTgtactcctctacctccacccagAGGACAGACCGATCATGGTGGCCATACATAGGAAGATCCTCCAGTCTGCAGGCCAGCCCTTTGACAGTTCTCCCATGAGGATGTGTGCCCGCAGTGGGGAGTACGTGACCATCGACACTAGCTGGTCCTCCTTCATCAACCCCTGGAGCAGAAAGGTGGCCTTCATCGTGGGCCGCCACAAAGTCCGAACCAGCCCCTTGAACGAGGACGTGTTCACCCCTCTGCGGGGCTGTGAGGGCCGCCCCGTGGCCCCAGAGATTGTGCGGCTGAGCGAGCAGATCCACCGTCTCCTGGTGCAGCCGGTCCACAGTGGAGGGTCGCAGGGCTACAGCAGCCTGACCTCAAATGGTTCCTGCTCCCACGAGCAGCGGTACCGACGCACGGCCTCCTCCGCCTCCGACAGCAAGTCCACCAACGCCATGGAGGCCATGGAGGCAGCCGTGGTCGCGCTGCACAAACCGATGACGTTCCAGCAGATCTGTAAGGACGTGTACATGGTCAAGACCAGCGGGCAGCAGGTCTTTATCAACTCTCACAACCGAGCCCTGTCCCGGCGACACGCTGTCACAGCGCTCCGAGCCACTGGAGAAGTGGAGCCCATCAGGAGTCTGATCCCGGAGGTGGCGTGTCCATCCAAAACCCCGGTGTTCAACACCCAGCAGCTGATGAAGGAGGAGCCCCCCAGTGCCTACAGCTACCAACAGATTAACTGTCTGGACAGCATCATTAGGTTCTTGGACGGCTGTAACGTTAAGAGGAAGTTTGGCTCGTCCTCTACCACGTCCACATCGGACGGAGAGAAACAACAACAGGAAACCGCTGGGAATGAAAAAGACGTTGTCATGGAAAATGCTCCTCCCACTCCTATGCCAGCCACTCCCACCACGACCAGGTCTCCACCGACCGCCATCATTAACCCTCCACCGCTCAAAACAACCTCTCCACCCAGCCGGAGAGGAGGTGGCCTGACCAAGGAGGTGCTCTCTGCtcacacacagcaggaggagcaaGCCTTCCTCTGTCGCTTCAGTGACCTGAGCCAGCTGAGGGTGATTGCTCCATCCTCGGCCCTGCGTTGCCCGCTCCCCAACACCAACCCCCGCCGCAGAAgagCGTGTTCCCCTGACTACCCTGCAGCTGGAGGCAGCAGTGGTCGCCGTGGAGCCAAGAGGCTGAAGCAGCAGGAGTCCTCAGAACAGAGGTGCCCTCTGGCTTTAGGCCTGACCGGACCCCTCCGGAGCCCCAACGTCGTCCCCATGAATTCCCCTCCCAGCTCCACCTACACCCTCCCAATGATGCCCCTGGGGCCTCCCACCACATCCTCCTGGCCCGTCTCCGTAGGATCCCAGGCCAGCCTGCCCTCTGTGCCCTACCCCTCGGGTACGCTCCCCCTGTACCccatctatcctcctctctcccagcccATACAGAACCAGATGGTGCCTCCTATGATGGCCCTGGTGCTGCCCAACTACATGTTCCCACAACTTCACCCCAACCTGCCCCAGATGACCACAGCCATGAACACAATGGGAAGCCCCATGCCCCAGCCGGGAGCCGCCATGGTTACCCCCGGCCCACAGCAATTCTTCAACCCCAGCGCTGGTTTCCCCTTCCCCGGTACCAACGTCATGCCATGCCCCATGCCTACGATGCCCTCGCTCATGCAAACTGCCATGCCTATCCAGACCCAACGGCCAGCCTCTGGGTCCAGCACCCCTCAGTCATGTAGTCAAGTACCAGTCGACCAGGAGGGTGCAGAGTCGCCCCTCTTCCACTCTCGCTGCTCCTCCCCGCTCAACCTGCTGCAGCTTGTGGAGGAGTCGCCTAGAAACCGGCTGGAGATCGCCACGGCGCTGGCTGCTTCCGCGCAACAGGCCACGATCCCCTCACAAGGGACTCAGGGGAGATCGCCAGATGACTCCAAGGAGAACgcCAATGATTCCAACCAGGATGGTGAATCTACCCCCAGTGACCTACTGGACCTGCTCCTGCAAGAGGACTCCCGCTCAGGCTCCGCGTCCTCTGGGTCGGGTTCTGACTCCTTGGGCACTGTGTCCAACGGCTGCAGCTCCTCAGGCAGTGGAACTAGTCGCAGTCGGAGTAGCCGCACCAGCAAGTACTTTGGCAGCATCGACTCGTCAGAGAACGACCACTCCCGCAAACAGCCAGCAGGTGGCAGCAGAGCAGGAGGAGACGGGGAGGAGCAGTTGATTAAGTGTGTCCTGCAGGATCCCATCTGGCTCCTCATGGCCAACACCGACCACAAGGTGATGATGACGTACCAGCTGCCGACCAAGGACAGGGAGACGGTGCTGCGGCAGGACCGCGAGGCCCTGCGGGCCATGCACAAACACCAGCCCCGTTTCACCGAGGACCAGAAGAGAGAACTGAGCCAGGTCCACCCCTGGATACGTACCGGGCGTCTGCCCCGCGCCATCAACGTCTCGGCATGTATGGGGTGCAAGTCTTCCCCCTTACCAGAGAGCACCGTGGACCAGGGAGGAGACGCTCgcagagaagaggaggagcacGCGGCGCACTCTGAAACACAAGGCAACGACCAGGAAATGACAACAGAGGAGCAGGAAGTGACCTGGCCAACGGGGGAGAAGAAAGCAAGGGCTGGTGAAACCTACATGACCCACTGAAAGGTTGAGGAGGGATCAAGAACACTTAAGTTATTGTGGATGTTTCTTCCAGTTGACAGACTCCATGCTTAAGAGATGCAAAATTCCAGGCCCAAAATGTCCAACGCTAATCCGAGAGACTCGAGACATTTTGTTCTCAGGCGGTTGTGGGTAATCGAAGTGCATTCTTTTTATATTAGCTGGGACTGCTGCCATGTCAGTGTCCCTATTGGCTGGCGGTCAAATCAATTGGGACTCTGGGTCCAATCAGTCGGTCCGCTTTGTGTGTTCCATCGCCAGTATGACAGTGGTTGTGAGAGAGACCGTCGTCATGACAGAAAGCCTTGAAAGCACGGGGGACACAGTACACGGTTAAAATCGGTGTACCATTGGATTGTACACaccaatatatatttttctgtgtGTATTTATTGAACATGTTCATTTAATAAGAAACGCCAAAGGTAAAGGTGTGAATGTGTTACAAAATGGTCACTTTATTTCACACCCGTTTTGGGATAGAATGGTTTCTCCTGTACAGTTCTAGTTCCTGTTGGGAGGATTCAtttcacagggagagagggggggacccCTTGGTTATTTTTTTCTGTTGGGAGGTTTTCTCAGATAACCAGGGAttgttgtaaattattttgttttctgcatatttttttttttcacttaaAACAAATGCTTGTTATATAAGTCAGTTATTAAGACAACATTTACACAGGCAGGTTTACTTAATTTTTTTAAGCAGTATGTATATTTTATATCACTGTAAATTTTGTTTCCGAGAAGAAATTGAAATGGTCTGTGTTTggtcaaaaacaaaacatttagaaAATCAAAGTACCCTCTGATCTCAGGGGAGTAGACGTGGGTGTAACACAATCGAATGAGGTGTCACTCTGGACAACAGCGTGACAGTTGAACACATGTGACCTCTGTCCCCATTCCTGATTTGCCGGGCATTATGGTCACCCTGCAGTGAAACGGTCCATGAAACTTTGCTGCAGACATCTTATCCTATGAAAACAGTCCAGGATACtgaacaaggtaaaaaaaaacttCCAGCTTCCATAGCAACAAAGAGAACAGACGTTTGATTGGAGGCATCCATCACAAGGATTCCGGAATACTGAAAACCAGATTGGCAAATGCTCTGATTGGTTGGTTTGAAAGGAGTTTGAACAACACAGCAGAACATTGGTCAGCTCCTAAGAGGTTTTTAGAGAATATCGTTGTATGACTGTCTCGCCTCTCTTTGGCACTGTACTAGTGATTGTGATATTCAGCTTACTTTCctaattattattttgtattaaaaaaaaagtaaataaataaatgaaatgatATCCAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2011528 lncRNA upstream 38754 57930042 ~ 57931556 (+) True G1756791
TU2011514 lncRNA upstream 55303 57913827 ~ 57915007 (+) True G1756781
TU2011485 lncRNA upstream 71705 57897745 ~ 57898605 (+) True G1756755
TU2011382 lncRNA upstream 113676 57854874 ~ 57856634 (+) False G1756670
TU2011570 lncRNA downstream 7201 57993359 ~ 57994768 (+) True G1756821
TU2011581 lncRNA downstream 14484 58000642 ~ 58001118 (+) True G1756829
TU2011574 lncRNA downstream 34332 58020490 ~ 58020810 (+) True G1756824
TU2011552 lncRNA downstream 43119 58029277 ~ 58095094 (+) False G1756807
TU2011554 lncRNA downstream 43119 58029277 ~ 58031884 (+) False G1756807
XM_021578291.2 mRNA upstream 73414 57865972 ~ 57896896 (+) True zgc:194930
XM_036958270.1 mRNA upstream 116496 57766080 ~ 57853814 (+) True LOC110500761
LOC118942955 mRNA upstream 738105 57212075 ~ 57232205 (+) True LOC118942955
LOC118942812 mRNA upstream 848386 57118735 ~ 57121924 (+) True LOC118942812
XM_036958267.1 mRNA upstream 1515282 56238529 ~ 56455028 (+) False LOC110500755
XM_036958276.1 mRNA downstream 10470 57996628 ~ 58020445 (+) False pcolceb
XM_036958275.1 mRNA downstream 10471 57996629 ~ 58020445 (+) True pcolceb
XM_036958280.1 mRNA downstream 98192 58084350 ~ 58141118 (+) False lrch4
XM_036958279.1 mRNA downstream 98193 58084351 ~ 58138224 (+) False lrch4
XM_021578319.2 mRNA downstream 419078 58405236 ~ 58411726 (+) False rwdd
TU2011526 other upstream 42066 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 1175736 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 1582688 56386407 ~ 56387622 (+) True G1755158
TU2007604 other upstream 2379170 55590605 ~ 55591140 (+) True LOC110500754
TU2007279 other upstream 2958632 55008434 ~ 55011678 (+) True G1753100
TU2012159 other downstream 419126 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 696979 58683137 ~ 58686523 (+) True G1757578
TU2013967 other downstream 2336057 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 2336057 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 2336356 60322514 ~ 60326620 (+) True G1758801

Expression Profile