LOC110500761 (LOC106608522)


Basic Information

Item Value
gene id LOC110500761
gene name LOC106608522
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 57766080 ~ 57853814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958270.1
CGTTCGCTCCCCCTGGCTCCCCCATCCACAATAAGAGATATCTGCGATGTGGAGTGGCGCAGGGCTCCCGCCTCGCTGACAGAGAGGAAACGAGCGAATCGCCCGCGTGACTCTCTCACTCATTGACCGCGCGGTCTATAGCAATTTTCATTATCCCTACCCGGTAGTGAGCAGTGAGGACCACTGCTAGGCTATCTCCATTGAAGGAAccgggacagagggagagagcgagagagagggggggggggggggcgagacgGTATTTGGAGCTCTCTCCAGCCTGCGCTCCCTCACAACCGCAGCAAGATGCTGAGCGCCGCTCTTTGCCAACCGGCTGCTGTTTCTCCCGTCTCCAGGGGCTGACTCCCGGTGAAGAGAACTCTAAATGGGCGTTTTTACCGTGTCTGTTGATTCTCAAGGATCCACGGTTGGATATTTTCGAAATGAAACGAATGAAAGATGTGAGCATCGAGAAGTGTTCTTGTTTTAGTGTGGTATCTGCAGTCTCCTCCCCCATAACAGTCAAGTCCACTGAACGCAGTGGTTCAGTGATTTTGAGTATTTATTTTCATGATAAATACGAAAAAGGATTCACATTTTGACATTAGGGACTTTCTAACTTTCCCCGGTGTTTCGTTGTCTGTTTTGCGGTCTCTGTCCGTGAAACAAAAGATCTCAGGACATCATCAACTCTGTGGAAAACAGCGACTTGAGATCTTCCCCCGGTCTGAACAGTTTAGCGCTGTTTCTCCCCTTCTCTATCCCTCTTCAAGCATCTCCTCTGGTTACGCTGGAAGTCGCCACCCATGTGGCCCTCGAGAGTGGGGAGCAGGCAGCCCTGTCCCCGGGAATCGGCACTCCGCAGGGCGGCCATCAGTGGCAACGTCCTCGCCCTGCCGCCGCACCACGTCCCCACGGGCAGGAGTGTCCGGGTCTTCATCTGTGCCAACCCTGACGACACAGAAGCGGAGAGGAACGCACTGAAAGAGCATGTCTACCCCAAACTACGGGACTTCTGCAGAGAGAATTATGGGATTGAGTTCCAGGTGGTGGACCTGTACTGGGGGATGGACCCAGAGGAGTGGGACAGTCCAGACCTGCAGCGTCTCAGGATGAAGTTACTAGAGGACTGTCTCCAGACGTCGGCAGGCCCATGTTTTGTTGGGCTGGTGGGAGAGAAGTATGGCAGTATACGCGTGCCGGGGGAGGTGGAGGCTCCAGAGTTTGAGATGATCTTGGATGCGGCGGTGGAGGCGGGCCTAGACACACACATCCTGGAGGAGTGGTACTGTCGAGATGAGAACTCCGTGCCGCCGGCCTACTACCTCAAACCCAAAGCCCAGATGTTGAAGAACTACCAAAACTCAATGGAGTCGAGCAGTGCAGCCAAGACGAAGAACGACAAGGCGTGGAGGAACGTGTCTGAGGAGATCAAGGGGATCTTCCGTAGGTCTGTCCTGCAGCTCCAGGAGAAGGGCACCATGAAGCCCCCCCAGGCCAAGAAATTCCTCTGTTCTGCCTTGGAGGATGAGTTGGACTTTGCCTTGGGCAAACAAACGCCTGCCTTCCTCAAGAAGTGTGTCTGCTATATCCGCAAGATCTCCAACTTCGACCGGCACGCCAAACTCCCGGAGATGGCCAAGTACATGGACATCGTCGTCGCCGAGGACCGCGTCATGCGTAACCAGGAAGCCTACGAACGTCTTTTAAAAGTACGAGACGAGTTTATCCCCACGGTGGTGGCCTCGTCCAACCTCCGGGTCTACTCCTCTGTGACGCACTGCGACATGAAGCTAGGCTACTCCCAGGAAGTGGAGAGCCACTACGTTGAAGGCTTGTGTAAACAGTTCTACGAGGATATGGTGGACATCATCCAGGCCACGGTCCAGCAGAACTTTGACACAGAGACCGACCCCCTGTACGACGAGATCCTCCAGCACCTCTCCCTGTGTAAGAACTTCTCTGCCTTCTACGATTATAAGAGCGAGACGCTGGACCTGGTGCAGGAGTATCTGCTGCCGTCTAAAGGGAGTAGGATGAGCCCCCTGGTGGTCTACGGTGGGCCCTGCACGGGGAAGACACTGCTGCTGGCCCAGGTGGCCAAACAGGCCTACACGTGGCTCCAGACGGAGATGGGCCCCGAGACAGACCCGGTAGTCATCGTCCGCTTCGTGGGCTCCTCAGAGTTTGCCACAAATCTGCGTACCCTACTCCAGAGCATCTGCGAGCAGATAGCCATCAACTATCGTTGCCTGATCCACTTTCTGCCCAACAAGATCCAGGAGATGACGGAGCTGCTAGTCAACCTCCTTGGGGAGTCCTCCTTCCAACGGCCCCTGGTCATCATCCTGGATGCGCTGGAGCAGCTCTCAGAGGCTGACGAGGCCCGCAAGCTGTGGTGGCTTCCCGCCCACCTGCCTCGCACTGTCCGCATCGTTGTCTCAACATTACCCAACAAGCACGGAATCCTCCAAAAACTCCGCTGTTTGATCCATGATGAAGGACGCTACGTAGAGCTGGTGCAGCGTGACCGCAAGACCTGTAGTCAAACACTGAAGCAGCAGCTGCTGGGGTTGAAGAGGAAGGTGACCTCGGGACAGCAGATCTATGTCAATGAAGCGCTGGCCAAGTGCACGCTACCCATGTTCGTCAACCTCGTCTACCGGGAGGTGGTACACTGGCGCTCGCACAAGGACGTGGACGACCGTTCGCTGTGCTCCACCGTGCACGAGAGCATCGAGCAGCTCTTCTACTCGGTGGAGAACAAGCTGGGGCAGCGGTTCGTGTTCAGGGCGCTGGGATACATTACCATGGCCAAGGCGGGCTTAACGGAGGTAGAGCTGGAGGATATTTTGTCACTGGATAACAGTGTGCTGGGAGACATCATGGTCAGTTCAAATCTAAAAAACCCGCTGAGGATCTCCTATGACCTGGTGGCGAGGCTGAAAGAGGAACTGGAGGGGTACCTGGTGGAGAGGCAGGTGAGAAACGTTACTCTGATGGTGTGGGCCAATAGACATCTGCACCTCATCGCCCAGAAGCTGTATCTTAGCAATGAGGAGGACGTGCACCAAATGCACAGCCTCCTGGCTGAGTACTTCCTGGGGGCGTGGTCGGGCGGCAGGAAAAAGATATTCCACTGCGACAACAACCACTTTGCCTCGCTCAACATCTCCCAACACAAGAACCCCCACCCCCAGCAGCCGTCCCACAAAGAAGCATCCGCCGAGAAGTACTCCTATGACAGGCAGACCCCTGAGCAGCCCTGGGTGTTCCAGTGCAACCTCCTGGAGCCTGACATCTTCTTCGTCAACCACAGGAAGATGACAGAGCTCCTCTACCACCTGACTCGGAGTGGCCGCACAGACGACCTCATGTACGGGGTCATCATGAACTTCAGTTGGCTCTACACCATGATCAAGATAGGGCAGTTTGAGAAGGCGCTGACTGACATCGACGTAGCCTACAGCTACTCCCAGGAGAAAGAACTCAAGTTCTTGGCCACCACACTGCGCAGCATCAAGGTCAAAGTGATGAATAACCCGGCATCCCTGTCTGCAGAGCTGCAGCAGAGGCTCCTCCCTGTGGTAACCTCCCTACCAAAGCTTCGACACCTCCTCCTGGAGTGCGACAAGGACGGCCCCAAGTACTGCTCCATCGtgcccctccactcctccatggATGTCACCTACAGTCCTGAAAGACTGCCGCTGTGCTCCAGCTACATGCAGATAGTGGAGATCCTGCCCACCCTAGCCCCCAACATTGTCCTCGTGGCCCTGGACGATGGGTCCGTCAGCACATGGGATGTGGAGAGCAGGCAGCTCCTACGGCAGATAGACACGGCCCGCTCAGTTGTCCTGGGGATCAGACTAACCAGTGACGAGAAGTACCTGGTCGTGGCAACCACCAAGAATACGCTGCTCATTTATGACAACCATAAGTCCTGCCTGCTGTCTGAAGTCGACATCAAGGGCTCCAAGCACTGTGGTATCACAGGAGGGGTGGCTTTCATCAACGGATTCACACTGGCCAGCCATCATGCCTTGGCCTGGCTAGAGGCCAGTAAAGACGTTAATGTGATCGATCTGCTCTACGGCTGGCCCCTCTACCAGTTCCACTGCTGGTACGAGGTCACCTGCGTCCAATGCTCCCCGGATGGAATGTATGCCTTCTGTGGTCAGTATCTCAACACCACGTCCATCTTCCATCTGGGCACCGGGGACAAGCTAGCCACGGTCACGTCTGAGTTTTCCGGGGGATTCGTCAAGTCCATCTTAGTTCTGGACACCATTCACCAGATGGTGATGATCGATAATGAGGGGAGCCTGTCGGTGTGGAACACCAAAGAGATCAACAACCCCAGACTGATGGAAGATTACGACTGCCGGGGGGACGAGAACGAGGTCGTAGGCATTGAGCTGTCAGAAGACCAGCACTCCATCCTCATCTGCAAAGACAAGAGCATCGAGGTCCTGGACACCAAGCTGTGGAAGATGGCAGAGAAGTTCAAGGCCAAGCGGGCAGAGCGTTTCGTGGCTGCAGTCCTCTCCAAAAATGGCCAAAGTATCGTGGCCTCCATGGAGAACACGTCGTCCATATTTGTGTGGAGGAGGGACAGTGGGCAGTGCATGGCCAGCCTGATTGAGATCTCTGGGGCCATCATTAAACTCATCAAGTCCACCCACCACAACCTGCTCCTGTCTGTGGCCAGCAGTGGAGTGCTATCAGTCTGGGACATTGACATCATCACCGCCATGTCCAACATTGACAAAACAGGTAAGAGGATCCAGAGTTTACAGCTCTCTGGAAGGGAAGACTTTGTGTTCACAATGGACGGCTCCGAAGCCATCCACAAGTGGAACTTCAGCACAGGCTTCATCGAGACTGTCTTCAAGCACGAGGGCTCGGTGGAGAACTGTGTCCTGACCTCCTCCGGGGATCTCATGGTGACGTCGGATGATAAGTGCAGCCAGTACATCTGGCATACGTCCACCGGCGAAAACATTTTCCGCATCAACGGACAGAAGATATCCCAGCTCCTGATGACCCACAATGACCAGTTCGTGGTGTCCCTCTGCGAACAAAACTGCTCCCGAGTCTGGAGGCTGGCCACCGGACACAAAGTGTGCAACATACTGGTGACCCTCCAGAACGCACTGATCACCACCGCAAACACCTTCCTAGTGGGAACTACTAAAAATAAGCTGCTCGCTGTCAGCCTCTGGTCAGGCAGTATTTCTAAGAAGTTTGTCTGTGACGACGGCATTAGCATTGTCAACTTCAAGCTTATTCCCGACTGCCCTGACTTCGTGGTCTTCATTACATCGACAGAGACTGTGTTTATATGGAGCGTGGCGGACGAGTCAGTCTGCAGACGCGTCCAGCTGCCTACTAACTTCCTCAAAAACCTGGAAGACTTCCAGATTTCACCAAATGGGAAACTGGGCATTGTCTCCAAGGGCGACGAGAACATTAACGTGTTGGACCTTCACAGCGGGAAGCTGAGGCTCGTTCACGCCGCCGGTATCATCTGGCGGCAGAAGCTGTCCAGGGACGGGCGCTACCTGGTCTACATCTGCTTCCGGAACTGCGATGAAGATGACGAAGCGGGTGTGGTGTCCAACCTGATCGTGATGCGTCTGGCGGATGGAAAGAGCATCGGGACATGCTCCCTCTACAAGACGCCCACCTTCCTCTGCCTGTCCCAGCGGGCACTCAACATCATCATCGGCTTCGAGGACGGCAGCATCAGCACCTACACGGTGGTGGACCGCGTGGATGCCGCACTCAAGATCAAGATTGCCACGTCCAACAGCCGGCAGATCGTCAACAACGCCTCGCAGAAGGTAAGGCCCAAGTGCGGCAACCACACTTTCAAGACCATCGCCGACTGCGTGTGGAGGGAGTCCACTGAAGTCTTCTCCAGGGATAGCCCCATCAATGTGTCTGACTCAGGGGAGCCAGAGACCACCACTCCCACCAAAAAGAGTGAACTGTTGCAGTGAGAGCGGGGTAGGGGGGGGGCTACAGTTGACCCTTGTTTACAGCCACCTGATTCAGCTGCAGATGTCCTCTGTGTAGTTTACTATATGCTGGCTGCTACTATAACGCTGCACTCAAGTCATGTATCACAACAACCTATATGATGTTAGCTTATTCATTTTCTTCACACGACGACTGTTAGAATCCAAGTAGTTTTTTATGGTTCTaatttatatataaaatatatttatttggtTTGACATCATTTTTCCTTTTTGCATTTGAAGAACAATGTTGATTTTTCCATTTCTCCATTTTCCATTTCCACATTTCCATTTCGGTTAGCTTTACCAATTGTCTTTGTACGTGTGTTCATTTCTTTGCGTTGTGCACATTAAGCCATAATGTCGTTGTtaagaaatgtgtatttatttatgtttaaTTAAATCATACATACTGAACATTAAACTATATACAccatcgttcaaaagtttggggtcacatcgaaatgtccttgttttttgaaagaaaagcacttttttttgtcctataaaataacatcacatttatcagcaataca

Function

NR:

description
NACHT and WD repeat domain-containing protein 2-like

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958270.1 True 6565 mRNA 0.54 8 57766080 57853814

Neighbor

gene id symbol gene type direction distance location
LOC118942955 NA coding upstream 533875 57212075 ~ 57232205 (+)
LOC118942812 NA coding upstream 644156 57118735 ~ 57121924 (+)
LOC110500755 LOC106608544 coding upstream 1311052 56238529 ~ 56455028 (+)
LOC118942793 LOC106608538 coding upstream 2171418 55592334 ~ 55594662 (+)
LOC110500754 LOC106591080 coding upstream 2173980 55590450 ~ 55592100 (+)
zgc:194930 LOC106608523 coding downstream 12158 57865972 ~ 57896896 (+)
per1b LOC106608520 coding downstream 116494 57970308 ~ 57986158 (+)
LOC118942956 NA coding downstream 126969 57980783 ~ 57981771 (+)
pcolceb pcolce coding downstream 142814 57996628 ~ 58020445 (+)
lrch4 lrch4 coding downstream 230536 58084350 ~ 58141118 (+)
G1756655 NA non-coding upstream 8064 57757675 ~ 57758016 (+)
G1756630 NA non-coding upstream 31948 57733915 ~ 57734132 (+)
G1756538 NA non-coding upstream 78235 57687603 ~ 57687845 (+)
G1756526 NA non-coding upstream 93177 57670796 ~ 57672903 (+)
G1756486 NA non-coding upstream 176879 57588910 ~ 57589201 (+)
G1756670 NA non-coding downstream 74 57853888 ~ 57856734 (+)
G1756755 NA non-coding downstream 43931 57897745 ~ 57898605 (+)
G1756781 NA non-coding downstream 60013 57913827 ~ 57915007 (+)
G1756791 NA non-coding downstream 76228 57930042 ~ 57931556 (+)
G1756821 NA non-coding downstream 139545 57993359 ~ 57994768 (+)
G1755570 NA other upstream 971506 56793731 ~ 56794574 (+)
G1755158 NA other upstream 1378458 56386407 ~ 56387622 (+)
G1753100 NA other upstream 2754402 55001579 ~ 55011678 (+)
LOC110500735 ablim2 other upstream 3458590 54206483 ~ 54342581 (+)
G1756789 NA other downstream 72666 57926480 ~ 57928244 (+)
rwdd rwdd4 other downstream 551470 58405236 ~ 58411726 (+)
G1757578 NA other downstream 829323 58683137 ~ 58686523 (+)
G1758801 NA other downstream 2468401 60322215 ~ 60326620 (+)
G1758818 NA other downstream 2497832 60351646 ~ 60353092 (+)

Expression


Co-expression Network