RNA id: XM_036958270.1


Basic Information

Item Value
RNA id XM_036958270.1
length 6565
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110500761
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 57766080 ~ 57853814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCGCTCCCCCTGGCTCCCCCATCCACAATAAGAGATATCTGCGATGTGGAGTGGCGCAGGGCTCCCGCCTCGCTGACAGAGAGGAAACGAGCGAATCGCCCGCGTGACTCTCTCACTCATTGACCGCGCGGTCTATAGCAATTTTCATTATCCCTACCCGGTAGTGAGCAGTGAGGACCACTGCTAGGCTATCTCCATTGAAGGAAccgggacagagggagagagcgagagagagggggggggggggggcgagacgGTATTTGGAGCTCTCTCCAGCCTGCGCTCCCTCACAACCGCAGCAAGATGCTGAGCGCCGCTCTTTGCCAACCGGCTGCTGTTTCTCCCGTCTCCAGGGGCTGACTCCCGGTGAAGAGAACTCTAAATGGGCGTTTTTACCGTGTCTGTTGATTCTCAAGGATCCACGGTTGGATATTTTCGAAATGAAACGAATGAAAGATGTGAGCATCGAGAAGTGTTCTTGTTTTAGTGTGGTATCTGCAGTCTCCTCCCCCATAACAGTCAAGTCCACTGAACGCAGTGGTTCAGTGATTTTGAGTATTTATTTTCATGATAAATACGAAAAAGGATTCACATTTTGACATTAGGGACTTTCTAACTTTCCCCGGTGTTTCGTTGTCTGTTTTGCGGTCTCTGTCCGTGAAACAAAAGATCTCAGGACATCATCAACTCTGTGGAAAACAGCGACTTGAGATCTTCCCCCGGTCTGAACAGTTTAGCGCTGTTTCTCCCCTTCTCTATCCCTCTTCAAGCATCTCCTCTGGTTACGCTGGAAGTCGCCACCCATGTGGCCCTCGAGAGTGGGGAGCAGGCAGCCCTGTCCCCGGGAATCGGCACTCCGCAGGGCGGCCATCAGTGGCAACGTCCTCGCCCTGCCGCCGCACCACGTCCCCACGGGCAGGAGTGTCCGGGTCTTCATCTGTGCCAACCCTGACGACACAGAAGCGGAGAGGAACGCACTGAAAGAGCATGTCTACCCCAAACTACGGGACTTCTGCAGAGAGAATTATGGGATTGAGTTCCAGGTGGTGGACCTGTACTGGGGGATGGACCCAGAGGAGTGGGACAGTCCAGACCTGCAGCGTCTCAGGATGAAGTTACTAGAGGACTGTCTCCAGACGTCGGCAGGCCCATGTTTTGTTGGGCTGGTGGGAGAGAAGTATGGCAGTATACGCGTGCCGGGGGAGGTGGAGGCTCCAGAGTTTGAGATGATCTTGGATGCGGCGGTGGAGGCGGGCCTAGACACACACATCCTGGAGGAGTGGTACTGTCGAGATGAGAACTCCGTGCCGCCGGCCTACTACCTCAAACCCAAAGCCCAGATGTTGAAGAACTACCAAAACTCAATGGAGTCGAGCAGTGCAGCCAAGACGAAGAACGACAAGGCGTGGAGGAACGTGTCTGAGGAGATCAAGGGGATCTTCCGTAGGTCTGTCCTGCAGCTCCAGGAGAAGGGCACCATGAAGCCCCCCCAGGCCAAGAAATTCCTCTGTTCTGCCTTGGAGGATGAGTTGGACTTTGCCTTGGGCAAACAAACGCCTGCCTTCCTCAAGAAGTGTGTCTGCTATATCCGCAAGATCTCCAACTTCGACCGGCACGCCAAACTCCCGGAGATGGCCAAGTACATGGACATCGTCGTCGCCGAGGACCGCGTCATGCGTAACCAGGAAGCCTACGAACGTCTTTTAAAAGTACGAGACGAGTTTATCCCCACGGTGGTGGCCTCGTCCAACCTCCGGGTCTACTCCTCTGTGACGCACTGCGACATGAAGCTAGGCTACTCCCAGGAAGTGGAGAGCCACTACGTTGAAGGCTTGTGTAAACAGTTCTACGAGGATATGGTGGACATCATCCAGGCCACGGTCCAGCAGAACTTTGACACAGAGACCGACCCCCTGTACGACGAGATCCTCCAGCACCTCTCCCTGTGTAAGAACTTCTCTGCCTTCTACGATTATAAGAGCGAGACGCTGGACCTGGTGCAGGAGTATCTGCTGCCGTCTAAAGGGAGTAGGATGAGCCCCCTGGTGGTCTACGGTGGGCCCTGCACGGGGAAGACACTGCTGCTGGCCCAGGTGGCCAAACAGGCCTACACGTGGCTCCAGACGGAGATGGGCCCCGAGACAGACCCGGTAGTCATCGTCCGCTTCGTGGGCTCCTCAGAGTTTGCCACAAATCTGCGTACCCTACTCCAGAGCATCTGCGAGCAGATAGCCATCAACTATCGTTGCCTGATCCACTTTCTGCCCAACAAGATCCAGGAGATGACGGAGCTGCTAGTCAACCTCCTTGGGGAGTCCTCCTTCCAACGGCCCCTGGTCATCATCCTGGATGCGCTGGAGCAGCTCTCAGAGGCTGACGAGGCCCGCAAGCTGTGGTGGCTTCCCGCCCACCTGCCTCGCACTGTCCGCATCGTTGTCTCAACATTACCCAACAAGCACGGAATCCTCCAAAAACTCCGCTGTTTGATCCATGATGAAGGACGCTACGTAGAGCTGGTGCAGCGTGACCGCAAGACCTGTAGTCAAACACTGAAGCAGCAGCTGCTGGGGTTGAAGAGGAAGGTGACCTCGGGACAGCAGATCTATGTCAATGAAGCGCTGGCCAAGTGCACGCTACCCATGTTCGTCAACCTCGTCTACCGGGAGGTGGTACACTGGCGCTCGCACAAGGACGTGGACGACCGTTCGCTGTGCTCCACCGTGCACGAGAGCATCGAGCAGCTCTTCTACTCGGTGGAGAACAAGCTGGGGCAGCGGTTCGTGTTCAGGGCGCTGGGATACATTACCATGGCCAAGGCGGGCTTAACGGAGGTAGAGCTGGAGGATATTTTGTCACTGGATAACAGTGTGCTGGGAGACATCATGGTCAGTTCAAATCTAAAAAACCCGCTGAGGATCTCCTATGACCTGGTGGCGAGGCTGAAAGAGGAACTGGAGGGGTACCTGGTGGAGAGGCAGGTGAGAAACGTTACTCTGATGGTGTGGGCCAATAGACATCTGCACCTCATCGCCCAGAAGCTGTATCTTAGCAATGAGGAGGACGTGCACCAAATGCACAGCCTCCTGGCTGAGTACTTCCTGGGGGCGTGGTCGGGCGGCAGGAAAAAGATATTCCACTGCGACAACAACCACTTTGCCTCGCTCAACATCTCCCAACACAAGAACCCCCACCCCCAGCAGCCGTCCCACAAAGAAGCATCCGCCGAGAAGTACTCCTATGACAGGCAGACCCCTGAGCAGCCCTGGGTGTTCCAGTGCAACCTCCTGGAGCCTGACATCTTCTTCGTCAACCACAGGAAGATGACAGAGCTCCTCTACCACCTGACTCGGAGTGGCCGCACAGACGACCTCATGTACGGGGTCATCATGAACTTCAGTTGGCTCTACACCATGATCAAGATAGGGCAGTTTGAGAAGGCGCTGACTGACATCGACGTAGCCTACAGCTACTCCCAGGAGAAAGAACTCAAGTTCTTGGCCACCACACTGCGCAGCATCAAGGTCAAAGTGATGAATAACCCGGCATCCCTGTCTGCAGAGCTGCAGCAGAGGCTCCTCCCTGTGGTAACCTCCCTACCAAAGCTTCGACACCTCCTCCTGGAGTGCGACAAGGACGGCCCCAAGTACTGCTCCATCGtgcccctccactcctccatggATGTCACCTACAGTCCTGAAAGACTGCCGCTGTGCTCCAGCTACATGCAGATAGTGGAGATCCTGCCCACCCTAGCCCCCAACATTGTCCTCGTGGCCCTGGACGATGGGTCCGTCAGCACATGGGATGTGGAGAGCAGGCAGCTCCTACGGCAGATAGACACGGCCCGCTCAGTTGTCCTGGGGATCAGACTAACCAGTGACGAGAAGTACCTGGTCGTGGCAACCACCAAGAATACGCTGCTCATTTATGACAACCATAAGTCCTGCCTGCTGTCTGAAGTCGACATCAAGGGCTCCAAGCACTGTGGTATCACAGGAGGGGTGGCTTTCATCAACGGATTCACACTGGCCAGCCATCATGCCTTGGCCTGGCTAGAGGCCAGTAAAGACGTTAATGTGATCGATCTGCTCTACGGCTGGCCCCTCTACCAGTTCCACTGCTGGTACGAGGTCACCTGCGTCCAATGCTCCCCGGATGGAATGTATGCCTTCTGTGGTCAGTATCTCAACACCACGTCCATCTTCCATCTGGGCACCGGGGACAAGCTAGCCACGGTCACGTCTGAGTTTTCCGGGGGATTCGTCAAGTCCATCTTAGTTCTGGACACCATTCACCAGATGGTGATGATCGATAATGAGGGGAGCCTGTCGGTGTGGAACACCAAAGAGATCAACAACCCCAGACTGATGGAAGATTACGACTGCCGGGGGGACGAGAACGAGGTCGTAGGCATTGAGCTGTCAGAAGACCAGCACTCCATCCTCATCTGCAAAGACAAGAGCATCGAGGTCCTGGACACCAAGCTGTGGAAGATGGCAGAGAAGTTCAAGGCCAAGCGGGCAGAGCGTTTCGTGGCTGCAGTCCTCTCCAAAAATGGCCAAAGTATCGTGGCCTCCATGGAGAACACGTCGTCCATATTTGTGTGGAGGAGGGACAGTGGGCAGTGCATGGCCAGCCTGATTGAGATCTCTGGGGCCATCATTAAACTCATCAAGTCCACCCACCACAACCTGCTCCTGTCTGTGGCCAGCAGTGGAGTGCTATCAGTCTGGGACATTGACATCATCACCGCCATGTCCAACATTGACAAAACAGGTAAGAGGATCCAGAGTTTACAGCTCTCTGGAAGGGAAGACTTTGTGTTCACAATGGACGGCTCCGAAGCCATCCACAAGTGGAACTTCAGCACAGGCTTCATCGAGACTGTCTTCAAGCACGAGGGCTCGGTGGAGAACTGTGTCCTGACCTCCTCCGGGGATCTCATGGTGACGTCGGATGATAAGTGCAGCCAGTACATCTGGCATACGTCCACCGGCGAAAACATTTTCCGCATCAACGGACAGAAGATATCCCAGCTCCTGATGACCCACAATGACCAGTTCGTGGTGTCCCTCTGCGAACAAAACTGCTCCCGAGTCTGGAGGCTGGCCACCGGACACAAAGTGTGCAACATACTGGTGACCCTCCAGAACGCACTGATCACCACCGCAAACACCTTCCTAGTGGGAACTACTAAAAATAAGCTGCTCGCTGTCAGCCTCTGGTCAGGCAGTATTTCTAAGAAGTTTGTCTGTGACGACGGCATTAGCATTGTCAACTTCAAGCTTATTCCCGACTGCCCTGACTTCGTGGTCTTCATTACATCGACAGAGACTGTGTTTATATGGAGCGTGGCGGACGAGTCAGTCTGCAGACGCGTCCAGCTGCCTACTAACTTCCTCAAAAACCTGGAAGACTTCCAGATTTCACCAAATGGGAAACTGGGCATTGTCTCCAAGGGCGACGAGAACATTAACGTGTTGGACCTTCACAGCGGGAAGCTGAGGCTCGTTCACGCCGCCGGTATCATCTGGCGGCAGAAGCTGTCCAGGGACGGGCGCTACCTGGTCTACATCTGCTTCCGGAACTGCGATGAAGATGACGAAGCGGGTGTGGTGTCCAACCTGATCGTGATGCGTCTGGCGGATGGAAAGAGCATCGGGACATGCTCCCTCTACAAGACGCCCACCTTCCTCTGCCTGTCCCAGCGGGCACTCAACATCATCATCGGCTTCGAGGACGGCAGCATCAGCACCTACACGGTGGTGGACCGCGTGGATGCCGCACTCAAGATCAAGATTGCCACGTCCAACAGCCGGCAGATCGTCAACAACGCCTCGCAGAAGGTAAGGCCCAAGTGCGGCAACCACACTTTCAAGACCATCGCCGACTGCGTGTGGAGGGAGTCCACTGAAGTCTTCTCCAGGGATAGCCCCATCAATGTGTCTGACTCAGGGGAGCCAGAGACCACCACTCCCACCAAAAAGAGTGAACTGTTGCAGTGAGAGCGGGGTAGGGGGGGGGCTACAGTTGACCCTTGTTTACAGCCACCTGATTCAGCTGCAGATGTCCTCTGTGTAGTTTACTATATGCTGGCTGCTACTATAACGCTGCACTCAAGTCATGTATCACAACAACCTATATGATGTTAGCTTATTCATTTTCTTCACACGACGACTGTTAGAATCCAAGTAGTTTTTTATGGTTCTaatttatatataaaatatatttatttggtTTGACATCATTTTTCCTTTTTGCATTTGAAGAACAATGTTGATTTTTCCATTTCTCCATTTTCCATTTCCACATTTCCATTTCGGTTAGCTTTACCAATTGTCTTTGTACGTGTGTTCATTTCTTTGCGTTGTGCACATTAAGCCATAATGTCGTTGTtaagaaatgtgtatttatttatgtttaaTTAAATCATACATACTGAACATTAAACTATATACAccatcgttcaaaagtttggggtcacatcgaaatgtccttgttttttgaaagaaaagcacttttttttgtcctataaaataacatcacatttatcagcaataca

Function

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2011349 lncRNA upstream 8064 57757675 ~ 57758016 (+) True G1756655
TU2011324 lncRNA upstream 31948 57733915 ~ 57734132 (+) True G1756630
TU2011228 lncRNA upstream 78235 57687603 ~ 57687845 (+) True G1756538
TU2011208 lncRNA upstream 93177 57670796 ~ 57672903 (+) True G1756526
TU2011166 lncRNA upstream 176879 57588910 ~ 57589201 (+) True G1756486
TU2011369 lncRNA downstream 74 57853888 ~ 57856734 (+) False G1756670
TU2011370 lncRNA downstream 977 57854791 ~ 57856634 (+) False G1756670
TU2011381 lncRNA downstream 977 57854791 ~ 57856634 (+) False G1756670
TU2011367 lncRNA downstream 1060 57854874 ~ 57856634 (+) False G1756670
TU2011374 lncRNA downstream 1060 57854874 ~ 57856634 (+) False G1756670
LOC118942955 mRNA upstream 533875 57212075 ~ 57232205 (+) True LOC118942955
LOC118942812 mRNA upstream 644156 57118735 ~ 57121924 (+) True LOC118942812
XM_036958265.1 mRNA upstream 1311052 56238529 ~ 56455028 (+) False LOC110500755
XM_036958267.1 mRNA upstream 1311052 56238529 ~ 56455028 (+) False LOC110500755
XM_036958268.1 mRNA upstream 1315929 56238529 ~ 56450151 (+) False LOC110500755
XM_021578291.2 mRNA downstream 12158 57865972 ~ 57896896 (+) True zgc:194930
XM_021578297.2 mRNA downstream 116494 57970308 ~ 57986158 (+) False per1b
XM_021578295.2 mRNA downstream 116495 57970309 ~ 57986158 (+) False per1b
XM_021578298.2 mRNA downstream 116496 57970310 ~ 57986158 (+) False per1b
XM_021578296.2 mRNA downstream 119779 57973593 ~ 57986158 (+) True per1b
TU2010154 other upstream 971506 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 1378458 56386407 ~ 56387622 (+) True G1755158
TU2007604 other upstream 2174940 55590605 ~ 55591140 (+) True LOC110500754
TU2007265 other upstream 2754402 55008434 ~ 55011678 (+) False G1753100
TU2011526 other downstream 72666 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 551470 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 829323 58683137 ~ 58686523 (+) True G1757578
TU2013967 other downstream 2468401 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 2468401 60322215 ~ 60326620 (+) False G1758801

Expression Profile