RNA id: XM_036958268.1


Basic Information

Item Value
RNA id XM_036958268.1
length 4170
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110500755
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 56238529 ~ 56455028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTGTGAATCGCTCTCACAGTGCCGCAGATAGGGGCTGCAAACGCACGCGGCGCTTATGCAGGTGAGAAAGGGACGCTTGGATTGAGAATTGCGGGACACTATGAAGATTCTCTCGTAGGAATTTCACAATATCTACATCGGAATTACAATTGTCCGTGTTTGTTTCATTTTTGTTATTCCCGCGTGGTCAGAGGTTTTGTGCTGGGgagtttatttattatttattcctCTCCCTATTGCCTGTAACTGTGTGAACTATAAAACACAGACTGCTTGTTATAAGTGAGTGGAGGTAAATGAATCAGAGCGCTCGGATTCTGCTTGGATAGGCAACTGGACACACAATCACTGCTTCTCCACTGCTTCAAGGTAAGAGGACGAGACCCTCCGTAAAGTAGGCTACTGTATCACCACAACTTGGGAATCTGTGTGGGCATTCCATTGCCACTACTCCGTATTGGACATATCTTCGGACGGGGAAATTAGGATTTTGACCATTTACATCATTTCTATATCAATCTGGGAAGATTTTTTTGTAACTGAAAAGACTTGGACTGATTTTAAATTTCAATTAAATAAGATAGCGTTTCTCTTTACGCGCATAAAATATTCGGATTCCTAATGAATTCATGGCATATGATATGACCGGACTGGACGGACTGTTTCGATTGTGTTTTGCCCAGTTTTTAttgaaagaaggaaagaaacattaaTTCGGTggaaaagggggagaggagagcccGTCCACTTGCTCTTATTCAGTGCAGTCGAAGCGGTGTGGGAAGACGTCCGGAGGAGGAAGTCTCACACCTACTGAAATGGAGGACTACAAATAATCCGAGAACGAAAATTATTGTTTTCCAAACAGTATACCAGCAAGTAAACGACATCCCCATTTGATTCAAGGCTTTAAAATCCATTCATTACATTGCGGGGAACAATGAGGACTACTGGCGCAGTGGACTATTTATGCTACAGTATACTCATCCTGCAGCTGCTGAATCAGCCTGCTGCTAAGCAAGTGCTCCGATATCGCTTGGCTGAGGAGGGACCCGCGGATGTCAGAGTAGGGAACGTAGCCGTGGACCTCGGAATCGTTGCCGGGTCTGGCGAGGTGACATTTACCCTCGAGTCCGGATCTGATTTTTTCAAAATAGATAATATAACAGGCGAGCTGACCACCAATGAACGGCGGATAGACCGTGAAAAATTACAGCAGTGTCAAATGATATTTGATGAAAACGAGTGTTTCATAGATTTTGAAGTGTCAGTAATTGGACCGGCGCAGAGCTGGGTTGACCTGTTCGAGGGGAAAGTCATTATTTTAGATATAAATGATAACACCCCGTCTTTCCCATCTCCCGTGCTGACCCTATCGGTGGAGGAGAACAGGCCGATTGGCACTCTCTATCTCCTACCCACGGCCACCGACAGAGATTTCGGTAGGAACGGAATTGAGAGATATGAGCTTATTCAAGACAGCGGGGAGAGCTCCAGGCGCCTGGGCTCAAGCTCAGGTGGTCGCGGAGCTGACAGGAGATTCGACGAGGGGGCAGGCAGGAGCAGCGTCTTTGAACTGCAAGTTGCTGACACAACCGACGGGGAGAAGCAGCCGCAGCTCATCATTAAAGGGGCACTGGACAGGGAGCAGAGGGACTCTTATGAGCTCACCCTGCGTGTTAGGGATGGGGGCGACCCCCCACGCTCTTCCCAGGCCATCCTGAGGGTGATGATCACTGATGTGAATGACAACAGCCCCCGCTTTGAGAAGGCTGTGTATGAAGCTGACCTGCcggagaacagctcccctggtgCCCCCATTCTGCAGCTGAAAGCAGCTGACGCAGACGTTGGGGTGAACGGTCAGATTGAGTACGTATTCGGCGCAGCCACAGAGTCAGTCCGTAGGCTATTGAGGCTGGATGAGAGCTCTGGGTGGCTGAGCGTGCTCCATCGTATTGACCGCGAGGAGGTGAGCCAACTGCGCTTCACTGTGATGGCGAGGGACCGAGGCCAGCCGCCCAAAATGGACAAGGCCACCGTGGTTCTCAACATCAAGGATGAGAACGACAACGTGCCAGCTATCGAGATTCGTAAGATCGGACGCATCTTCCTGAAGGATGGAGTGGCCAACGTGGCTGAGGATGTAGTGGTGGACACGCCTATAGCTTTGGTCCAGGTGTCAGACCGCGACCAGGGGGAGAACGGTATCGTGACCTGCACCGTGGTGGGTGACGTGCCCTTCCAGCTCAAACCGGCCAGTGAGATTGAGGGTGAGATGAATAAGAAGAAATACTTCCTCCATACGTCAGCGCCGCTGGACTACGAGGCCACACAGGAGTACAACGTGGTCATCGTGGCGGTGGACTCAGGAAGCCCTAGCCTGGCCAGTAATAACTCGCTCATCGTAAAGGTGGGCGACTTCAACGACAACCCACCCATCTTTAGCCAGAACGTGGTGGAGGTGTCCTTTCCAGAAAACAATGCCCCCGGCGAGAGGGTGACCACTGTACAGGCCATAGATGCTGATAGTGGCAAGAACGCGGAAATCGCCTACTCCCTCGACTCCTCTGTGAATGGGATATTCTCCATTAATGCCGACAACGGTGACATCAGAGTAAACACCATTCTGGACAGAGAACAAACAGAGAGGTACCAGTTCAAAGTAATAGCTAAAGATAAGGGCATGCCCATACTCCAGGGGTCAGCCACTGTGGTAGTCTTAGTGGCTGATAAGAATGACAATGAGCCTAAATTCATGCAGGATGTGTTCACCTTCTACGTCAAAGAGAACCTTACACCCAACAGCCCTGTTGGCATGGTGACCGTCATTGACGCCGACAAAGGCCAGAACGCAGAAATGAGCCTCTTCatcgaggaagaggaggagatctTCTCCATTGAGAACGACACAGGAACCATTTTCTCCACCATGTCGTTTGACCGCGAGCAGAAAACCACCTACACGTTCCGGGTCAAGGCTGTGGACAGCGGAGACCCACCTAGATCAGCTACTGCCACCGTGTCACTCTTCGTGATGGACGAGAATGACAACCCGCCGACCGTTACCTTCCCCATCAATAGCTCATACACCCTCCTACCCCCCTCCAGCAATGTTAGGACTGTAGTACGAACTGTCATGGCCACCGATACCGACACAGGGATCAACGCTGACCTAAACTACAGTATCGTCGGGGGCAACCCTTTCAAACTGTTTGAGATCGACGGGGGAAGTGGGGTCATCTCACTGGTGGGGAAACTGGAGCAGAAACACTATGGCCTCCACAGACTGGTGGTTCAGGTGAACGACAGTGGCCAGCCCTCGCAGAGCACCACCACCATGGTGCACGTCTATGTCAACGAGACCCTCTCCAACTCCACCATCGTTGAGGCCCAGGTGGCTAAGAGCCTGGGCACTCCGCTCAATACCAACATCGCCGGTGACCCCAACTACGACCTGGGCAAGCAGCGGCTGAGCATTGTCATCGGCGTGGTGTCGGGCATCATGACGGTaatcctcatcatcctcatcgTGGTCATGGCTCGCTACTGCCGCCCCAAGAACAAGAATGGCTACGAGGCGGGCAAGAAGGACCACGAGGACTTCTTCACCCCTCAGCAGCATGACAAGGGCAAGAAGCccaagaagaacaagaagaacaaaCAGCCGTTGTACAGCAGCATTGTCACCGTCGAGGCCTCCAAGCCCAACGGCCAGCGCTACGACGGCGTCAATGAGAAGCTGACCGACAGCCCCGGGATGGGCAGGTACCGCTCCGTTAACGGAGGGCCCGGAAGCCCGGATTTGGCCCGGCACTACAAGTCCAGCTCGCCACTGCCCACGGTCCAGCTCCACCCCCAGTCGCCCACGGCCGGGAAAAAGCATCAGGCTGTTCAGGACCTGCCCCCTGCCAACACCTTCGTTGGCACCGGAGATAACATTTCCCTTGGATCTGACCACTGCTCCGAGTACAGCAGTCAAACCATCAACAAGTACAACAAACAGACACCCGGACCTTGCCTGACGTAGCCATGACAGGCAAGTGCACCCGGGAATGTGACGAGTACGGCCACTCGGACTCCTGCTGGATGCCTGTGCGCACGTCGCCCGAGCGACGGCCCAAGACGACCACCACCCAACAACCAAAGCTTTCCACCTTCATGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2009592 lncRNA upstream 41546 56196750 ~ 56196983 (+) True G1755069
TU2009582 lncRNA upstream 53119 56185200 ~ 56185410 (+) True G1755059
TU2009570 lncRNA upstream 64396 56173865 ~ 56174133 (+) True G1755047
TU2009569 lncRNA upstream 65215 56173109 ~ 56173314 (+) True G1755046
TU2009541 lncRNA upstream 96137 56141091 ~ 56142392 (+) True G1755018
TU2009616 lncRNA downstream 1008 56451159 ~ 56455022 (+) False LOC110500755
TU2009617 lncRNA downstream 1008 56451159 ~ 56455022 (+) True LOC110500755
TU2009759 lncRNA downstream 14985 56465136 ~ 56465461 (+) True G1755204
TU2009769 lncRNA downstream 32136 56482287 ~ 56482487 (+) True G1755214
TU2009772 lncRNA downstream 34927 56485078 ~ 56485537 (+) True G1755217
XM_036956497.1 mRNA upstream 643867 55592334 ~ 55594662 (+) True LOC118942793
XM_036956523.1 mRNA upstream 646429 55590450 ~ 55592100 (+) False LOC110500754
XM_036956521.1 mRNA upstream 680627 55516569 ~ 55557902 (+) False LOC118936467
XR_005038651.1 mRNA upstream 681874 55542858 ~ 55556655 (+) True LOC110500898
XR_005038649.1 mRNA upstream 725577 55511407 ~ 55512952 (+) True LOC118942952
LOC118942812 mRNA downstream 668584 57118735 ~ 57121924 (+) True LOC118942812
LOC118942955 mRNA downstream 761924 57212075 ~ 57232205 (+) True LOC118942955
XM_036958270.1 mRNA downstream 1315929 57766080 ~ 57853814 (+) True LOC110500761
XM_021578291.2 mRNA downstream 1415821 57865972 ~ 57896896 (+) True zgc:194930
XM_021578297.2 mRNA downstream 1520157 57970308 ~ 57986158 (+) False per1b
TU2007604 other upstream 647389 55590605 ~ 55591140 (+) True LOC110500754
TU2007277 other upstream 1226851 55008326 ~ 55011678 (+) False G1753100
TU2007265 other upstream 1226851 55008434 ~ 55011678 (+) False G1753100
TU2007279 other upstream 1226851 55008434 ~ 55011678 (+) True G1753100
TU2007280 other upstream 1227659 55001579 ~ 55010870 (+) False G1753100
TU2010154 other downstream 343580 56793731 ~ 56794574 (+) True G1755570
TU2011526 other downstream 1476329 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 1955133 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 2232986 58683137 ~ 58686523 (+) True G1757578
TU2013967 other downstream 3872064 60322215 ~ 60326620 (+) False G1758801

Expression Profile