RNA id: TU2009592


Basic Information

Item Value
RNA id TU2009592
length 234
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1755069
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 56196750 ~ 56196983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcaaaagctttggccaagttaATAAATAGCAgaacaacattgcttagaatcaagggcaatggtgacatcattgagggcATTTAAGaatgcagtgacacatccataacctcagcggaaaccagattgcataccagaaagaatattatagacatcaagaaagccagtgagttgattattgacacgttttccaacacttttgatgaACAGGGAaaaatagaaattggcctataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2009582 lncRNA upstream 11340 56185200 ~ 56185410 (+) True G1755059
TU2009570 lncRNA upstream 22617 56173865 ~ 56174133 (+) True G1755047
TU2009569 lncRNA upstream 23436 56173109 ~ 56173314 (+) True G1755046
TU2009541 lncRNA upstream 54358 56141091 ~ 56142392 (+) True G1755018
TU2009536 lncRNA upstream 63913 56132635 ~ 56132837 (+) True G1755014
TU2009646 lncRNA downstream 94891 56291874 ~ 56292448 (+) True G1755118
TU2009662 lncRNA downstream 103508 56300491 ~ 56301694 (+) True G1755127
TU2009704 lncRNA downstream 189956 56386939 ~ 56387758 (+) True G1755159
TU2009705 lncRNA downstream 193060 56390043 ~ 56390362 (+) True G1755160
TU2009706 lncRNA downstream 193544 56390527 ~ 56390781 (+) True G1755161
XM_036956497.1 mRNA upstream 602088 55592334 ~ 55594662 (+) True LOC118942793
XM_036956523.1 mRNA upstream 604650 55590450 ~ 55592100 (+) False LOC110500754
XM_036956521.1 mRNA upstream 638848 55516569 ~ 55557902 (+) False LOC118936467
XR_005038651.1 mRNA upstream 640095 55542858 ~ 55556655 (+) True LOC110500898
XR_005038649.1 mRNA upstream 683798 55511407 ~ 55512952 (+) True LOC118942952
XM_036958268.1 mRNA downstream 41546 56238529 ~ 56450151 (+) False LOC110500755
XM_036958265.1 mRNA downstream 41546 56238529 ~ 56455028 (+) False LOC110500755
XM_036958267.1 mRNA downstream 41546 56238529 ~ 56455028 (+) False LOC110500755
LOC118942812 mRNA downstream 921752 57118735 ~ 57121924 (+) True LOC118942812
LOC118942955 mRNA downstream 1015092 57212075 ~ 57232205 (+) True LOC118942955
TU2007604 other upstream 605610 55590605 ~ 55591140 (+) True LOC110500754
TU2007277 other upstream 1185072 55008326 ~ 55011678 (+) False G1753100
TU2007265 other upstream 1185072 55008434 ~ 55011678 (+) False G1753100
TU2007279 other upstream 1185072 55008434 ~ 55011678 (+) True G1753100
TU2007280 other upstream 1185880 55001579 ~ 55010870 (+) False G1753100
TU2009701 other downstream 189424 56386407 ~ 56387622 (+) True G1755158
TU2010154 other downstream 596748 56793731 ~ 56794574 (+) True G1755570
TU2011526 other downstream 1729497 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 2208301 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 2486154 58683137 ~ 58686523 (+) True G1757578

Expression Profile