RNA id: XR_005038649.1


Basic Information

Item Value
RNA id XR_005038649.1
length 506
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118942952
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 55511407 ~ 55512952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTTGGATCAACAGAACCATCACATGAACATGTTCTGTATAGCCTCTCTAACTGTTTCCTTCTCTGGCTCTGTTCAACGCCTTTTCCAGTGGGATAAATGTCACATCACAGTTTTGTTTGTTTAGAGATTAATAACAAATTCAAGCAAATGAGGAGCCGTGTCATGTTTAAAAAGGGACAAACGTGATGACAGACACacagtaggagagacagagagacagaatggggaGAGAGTTGGATAgcaagatagagatagagagacagagagagacagagcgagagtaaGAGAGTTTTCTTCAAACAACAGTGATGGAAACGTTGTTGTATCTCACCCTGCTAATCTCAGGGTTCTACACACCTTCCTCATGCCTTCATCAGTATCACCTCATTAGCAACAATACGAACTGGACTGATGCCCAGAGTTACTGCAGAGCACATTACACTGATCTGGCTACAGTAGATGACATGGAGGACCTGAACAGTCCcagcgcaccggagacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2007531 lncRNA upstream 70653 55440388 ~ 55440754 (+) True G1753304
TU2007530 lncRNA upstream 74444 55434688 ~ 55436963 (+) False G1753303
TU2007528 lncRNA upstream 74444 55435618 ~ 55436963 (+) True G1753303
TU2007481 lncRNA upstream 78466 55431631 ~ 55432941 (+) True G1753269
TU2007471 lncRNA upstream 80101 55430644 ~ 55431306 (+) True G1753268
TU2007576 lncRNA downstream 3989 55516941 ~ 55518418 (+) False LOC118936467
TU2007583 lncRNA downstream 24514 55537466 ~ 55540279 (+) True LOC118936467
TU2008848 lncRNA downstream 85798 55598750 ~ 55598988 (+) True G1754413
TU2008882 lncRNA downstream 112450 55625402 ~ 55625604 (+) True G1754447
TU2008961 lncRNA downstream 152595 55665547 ~ 55665750 (+) True G1754482
XM_036958261.1 mRNA upstream 6094 55502540 ~ 55505313 (+) True LOC110500897
XM_036958264.1 mRNA upstream 32487 55476435 ~ 55478920 (+) True LOC118942951
XM_036956520.1 mRNA upstream 35004 55474222 ~ 55476403 (+) True LOC110500896
XR_005038650.1 mRNA upstream 38363 55456057 ~ 55473044 (+) True LOC118942953
XM_036958259.1 mRNA upstream 81701 55349915 ~ 55429706 (+) False LOC110500895
XM_036956521.1 mRNA downstream 3617 55516569 ~ 55557902 (+) False LOC118936467
XR_005038651.1 mRNA downstream 29906 55542858 ~ 55556655 (+) True LOC110500898
XM_036956523.1 mRNA downstream 77498 55590450 ~ 55592100 (+) False LOC110500754
XM_036956497.1 mRNA downstream 79382 55592334 ~ 55594662 (+) True LOC118942793
XM_036958268.1 mRNA downstream 725577 56238529 ~ 56450151 (+) False LOC110500755
TU2007277 other upstream 499729 55008326 ~ 55011678 (+) False G1753100
TU2007265 other upstream 499729 55008434 ~ 55011678 (+) False G1753100
TU2007279 other upstream 499729 55008434 ~ 55011678 (+) True G1753100
TU2007280 other upstream 500537 55001579 ~ 55010870 (+) False G1753100
TU2006819 other upstream 1203917 54206698 ~ 54307490 (+) True LOC110500735
TU2007604 other downstream 77653 55590605 ~ 55591140 (+) True LOC110500754
TU2009701 other downstream 873455 56386407 ~ 56387622 (+) True G1755158
TU2010154 other downstream 1280779 56793731 ~ 56794574 (+) True G1755570
TU2011526 other downstream 2413528 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 2892332 58405284 ~ 58410079 (+) False rwdd

Expression Profile