RNA id: XM_036956497.1


Basic Information

Item Value
RNA id XM_036956497.1
length 1479
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118942793
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 55592334 ~ 55594662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAACCACAGCATCCACCCcgacaacaaccacaaccacgCCTTCCACCCTGACAACAACCACAACCATGCCTTCCACCccgaccacaaccacaaccacgcCTTCCACCCCGACGACAACCATGCCTTCCACCCCGACAACAACCACACCTTCCACCCcgacaacaaccacaaccacgCCTTCCACCCtgacaacaaccacaaccacgCCTTCCACCccgaccacaaccacaaccacgaCTTCCACCCCAACAACAACGACGCCTTCCACCCCGACAACAACCACGCCTTCCACCTcgacaacaaccacaaccacaccttCCACCCtgacaacaaccacaaccacgCCTTCCACCCCGACAACAACCATGCCTTCCACCCCGACCACAACCACGCCTTCCACCCCGACCACAACCACGCCTTCCACCCCGACCCCAACCACGATTTTCCCAAAGATCTTACGCAAGACTACCACCCCGACCTCTGAGAAACCTCAACTGAAGAGACAGTTGGTGAGAATGAAGATGACCCCAAAGGATCCAAATATGAACCTCAGTGATCCTGCTGTTCAGGACTCCATCTTACAAGAGATAAGGAacaagctgaaggagcaggggtTACCTGCAGACACCATAGTGACATGGAAAAAGCAGCCTGATGGGAAGGTCTTTCACAAGGAGGAAGAGGGGTCTCccaagaaagaagaggaggagaagaagatgaagaggatGATGACAAAGAGAGAACTCTAATTATGTTAAATGTTCTCTCCTTTTTTATTTAGATTAATTATCTGTACtgggatgttttttctcaccctAATTAAATGTGTTTTCTTAAGTTAATTGTTTAATTATAAACATTTAATAGTGTTTTATCTTGAGATGTTTTTATTGATCATTTTCTTGACTTTTATTACAGGGTGTGTTCTCAAGATAGACATTTCACACATCATGTCTGTAAATGAGTTATTTGTAGTTATGTTGATATTCAGGGCTGAGAAAAAGTATTTGTCTCCTTTCTAATTTTCTCAACTTTTACATATTTAAGATGaagaatgttatcagatcttcaaagAAAACAGAATATTAGATGAAGGGAACTTGAGTGAACAAGTAACACAACAATTACctacttatttcatttatttcataacTAAGTTATGTAACACCCAATGTTCATGTGTTAAAAAGTAAACTCAgggacatttgtgggttttcaatcatgaactgctcatttcaagtcctgccacaacatctcaaatgGGATCATTAGGTCTGGACATTGACTAGGTCATTCCAAAACtataaatgtgttgtttttttaaccattttcatgtagaactgattgtgtgttttggatcaatgtcttgctgcatgaccaaCCTGCGTTTCAGCATCAGgtcacagacggatggcctgacattctcctgtagaattctctgatgcagagcagaattcatggttccttctattaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2007583 lncRNA upstream 52055 55537466 ~ 55540279 (+) True LOC118936467
TU2007576 lncRNA upstream 73916 55516941 ~ 55518418 (+) False LOC118936467
TU2007531 lncRNA upstream 151580 55440388 ~ 55440754 (+) True G1753304
TU2007530 lncRNA upstream 155371 55434688 ~ 55436963 (+) False G1753303
TU2008848 lncRNA downstream 4088 55598750 ~ 55598988 (+) True G1754413
TU2008882 lncRNA downstream 30740 55625402 ~ 55625604 (+) True G1754447
TU2008961 lncRNA downstream 70885 55665547 ~ 55665750 (+) True G1754482
TU2009085 lncRNA downstream 178251 55772913 ~ 55773150 (+) True G1754601
TU2009088 lncRNA downstream 182931 55777593 ~ 55777799 (+) True G1754604
XM_036956523.1 mRNA upstream 234 55590450 ~ 55592100 (+) False LOC110500754
XM_036956521.1 mRNA upstream 34432 55516569 ~ 55557902 (+) False LOC118936467
XR_005038651.1 mRNA upstream 35679 55542858 ~ 55556655 (+) True LOC110500898
XR_005038649.1 mRNA upstream 79382 55511407 ~ 55512952 (+) True LOC118942952
XM_036958261.1 mRNA upstream 87021 55502540 ~ 55505313 (+) True LOC110500897
XM_036958268.1 mRNA downstream 643867 56238529 ~ 56450151 (+) False LOC110500755
XM_036958265.1 mRNA downstream 643867 56238529 ~ 56455028 (+) False LOC110500755
XM_036958267.1 mRNA downstream 643867 56238529 ~ 56455028 (+) False LOC110500755
LOC118942812 mRNA downstream 1524073 57118735 ~ 57121924 (+) True LOC118942812
LOC118942955 mRNA downstream 1617413 57212075 ~ 57232205 (+) True LOC118942955
TU2007604 other upstream 1194 55590605 ~ 55591140 (+) True LOC110500754
TU2007277 other upstream 580656 55008326 ~ 55011678 (+) False G1753100
TU2007265 other upstream 580656 55008434 ~ 55011678 (+) False G1753100
TU2007279 other upstream 580656 55008434 ~ 55011678 (+) True G1753100
TU2007280 other upstream 581464 55001579 ~ 55010870 (+) False G1753100
TU2009701 other downstream 791745 56386407 ~ 56387622 (+) True G1755158
TU2010154 other downstream 1199069 56793731 ~ 56794574 (+) True G1755570
TU2011526 other downstream 2331818 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 2810622 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 3088475 58683137 ~ 58686523 (+) True G1757578

Expression Profile