RNA id: LOC118942955


Basic Information

Item Value
RNA id LOC118942955
length 1320
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118942955
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 57212075 ~ 57232205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcgagagacagagagagagagagaaacagagagagagagagagaaacagagagagagagagagaaaaggagttggggtgagagaggtgagagagagagagagagagagagagagagagagagaaagagagagagaaacagagagggagagagagacagagagagagagagagacagagagacagagagagagagaaaaacagagagagagacagagacagagagagagagaaacagagagagagagagagacagagagagagagaaacagagagagagagagagagagaaacagagagagagagagagagagaaacagagagagagagagagagagacaaagagagagagagagagagagagacagagagagagagagagaaagagagagagagagagagacaaagagagagagagagagacagagagagagagagagagagaaacagagagagagagagagagagagagacagagagagagagagacagagagatcaatcaaacataaaaatagagagagagagagacagagagagagagagagagagagagagagagacagagagagagagagagagaaagagacagagagagagagagagagagaaagagagagagagagacagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagaagggaaagagagaaacagaaagagaaagatagagagagagaaagagagagaaagagaaagagagagagagaaacagagagagagagagaagagaaacagagaaacagagagagagaaacagaaagagaaagagagagagaaacagagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaaagagagtgagaaacagagagagatagagagagagagagagagagagagagagaaacagaaagagaaagagagagagaaacagagagggagagagagagagagagagagagagagaaagaaagagagagagagagagaaacagagagagagagagagaaaaagaaacagaatgagaaagagagagaaacagagagagagagagagagagagagagagagagagggagagacagagagagagaaaccgagaaacagagaaagagagagggaaacagacagagaaagagagaaagaaacagagagagagagagagagagagaaagagaaagagatagagaaacagagagatagagagagagagagagagagagagagagagggagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2010675 lncRNA upstream 25401 57186363 ~ 57186674 (+) True G1756045
TU2010667 lncRNA upstream 36325 57174809 ~ 57175750 (+) True G1756037
TU2010663 lncRNA upstream 41470 57170339 ~ 57170605 (+) True G1756034
TU2010660 lncRNA upstream 44056 57167775 ~ 57168019 (+) True G1756031
TU2010643 lncRNA upstream 59255 57152511 ~ 57152820 (+) True G1756014
TU2010756 lncRNA downstream 91391 57323596 ~ 57323932 (+) True G1756113
TU2010777 lncRNA downstream 124725 57356930 ~ 57376994 (+) True G1756132
TU2010850 lncRNA downstream 257129 57489334 ~ 57540973 (+) True G1756204
TU2011132 lncRNA downstream 320363 57552568 ~ 57552804 (+) True G1756456
TU2011134 lncRNA downstream 324827 57557032 ~ 57557807 (+) True G1756458
LOC118942812 mRNA upstream 90151 57118735 ~ 57121924 (+) True LOC118942812
XM_036958265.1 mRNA upstream 757047 56238529 ~ 56455028 (+) False LOC110500755
XM_036958267.1 mRNA upstream 757047 56238529 ~ 56455028 (+) False LOC110500755
XM_036958268.1 mRNA upstream 761924 56238529 ~ 56450151 (+) False LOC110500755
XM_036956497.1 mRNA upstream 1617413 55592334 ~ 55594662 (+) True LOC118942793
XM_036958270.1 mRNA downstream 533875 57766080 ~ 57853814 (+) True LOC110500761
XM_021578291.2 mRNA downstream 633767 57865972 ~ 57896896 (+) True zgc:194930
XM_021578297.2 mRNA downstream 738103 57970308 ~ 57986158 (+) False per1b
XM_021578295.2 mRNA downstream 738104 57970309 ~ 57986158 (+) False per1b
XM_021578298.2 mRNA downstream 738105 57970310 ~ 57986158 (+) False per1b
TU2010154 other upstream 417501 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 824453 56386407 ~ 56387622 (+) True G1755158
TU2007604 other upstream 1620935 55590605 ~ 55591140 (+) True LOC110500754
TU2007265 other upstream 2200397 55008434 ~ 55011678 (+) False G1753100
TU2011526 other downstream 694275 57926480 ~ 57928244 (+) True G1756789
TU2012159 other downstream 1173079 58405284 ~ 58410079 (+) False rwdd
TU2012464 other downstream 1450932 58683137 ~ 58686523 (+) True G1757578
TU2013967 other downstream 3090010 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 3090010 60322215 ~ 60326620 (+) False G1758801

Expression Profile