RNA id: TU2056145


Basic Information

Item Value
RNA id TU2056145
length 4147
lncRNA type sense_over
GC content 0.43
exon number 5
gene id LOC110502085
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28977890 ~ 28984226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGACTGCCAACCTGCTGTCTAGTTACATAGTCCTCATATCCATGGCAACATTCTATTTTAGAACCTTAGACTAAATTGTAGCGATAAATTGTAGAAACTTTAGATTATATATTGAGGGGGTAGATGGCTTATACCGAATTCACATTTAAACCTTAGGTTCAGATGTTGTAAGCAGGACAAATGGGCCTGTTTGATAAACTGTCGGGTTGGCTGGGTCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACCACCATCATCAACCAACTCAAGCCCAGTAATGTAAGTCCACTGACATGGCCTAACTATAATTGAACATATGGGCCTACTGTAGTCCATTGACTGATGTATTTGATTGGGTTCTAAATTGAAACGGATTAACGTGGTGGCCTGCTCTAGGCGCGCGCGTCCTTTGCGCGCTGGCCTGTCAATGGAAAGAGACGGAGTTGTGTATCTGAGTTGAGTGAGCTGAGCCATGGAGATGGTGGTTATACATAAGCGCTGTGAGTGTTAACCGTTGTggttatacactacatgaccaaaagtcattgaacatctcattccagaattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgctgcagggacttcctTCCTTTCACCCACAAGAGCAttactgatgttgggcaattaggcctggcttgcaggcAGCGTTCTAATTCATatcaaaggtgttcaatggggttgaggtcagggctctgtgcaggcccgtcaagttcttccacactgatcttgacaaatcAGTTCTGTATGAACCTTGCTTTGTGcccaggggcattgtcatgctgaaacagaaaatggccttttccaaactgttgccacaaagttggacgcacggaatcgtctagaatgccatttttgtatgctgtagtgttgatttccctttactggaactaaggggcctagcacaaaccatggaaaacagccccagaccattatttctcctccaccaaactttacagttggcactatgcatttggacaggtagcgttctcctggcatccgccaaacccagattcgtccgtcggactgccaaatggtgaagcgtgattcatcattccagagaacgcgtttccactgctccagagtcagcAAGCattacaccattccagccaacgcttggAATTGCGCATGGGGATCTGAGGCTTGTGTGTGgttgcttggccatggaaacccgttTCATGAAGCTCCAATGAACAGTTCTTgcgctgatgttgcttccagaggcagtttggaacttacAACATTTCCCAATGGGGAAAATAAAGTCAAAGTCAgtaaagtagtgagtgttgcaactgagggtAGATGATTTTCaccgcttcagcactctgcggtcccattctgtgagcttgtgtggccttccaCTTTGTGACTTaaccattgttgctcctagatgtttccacttcacaataacagcacttacatttgagctctagcagggcagaaatttgacgaacggacttgttggaaaggtggcatcctatgacggtgccacgttgaaagtcacagagctctTAAGTAAGGCCCATGaatttgatacacctgtcagcaatgggggTGGCTGAAGtaaccgaatccactaatttgaaggagtgtccacatacttttgtatatatagtgtatattagaACTGTGAATTTTAGGCATTGTGGTTATaagcagtgatgtagtggtaaacaAAAACATAGGTGGGTAAACTGATCGCCAGTCGCGGTGAAAAGAGTAACGTTCCCTATACTTTCCATGAATTCTTTCCCAAAAGGTGGGCGTACTGTCATGCAAAAAATAAAGGTGAGTAAATTGTGTTACTTGCGTTTactctccactacaccactgattataagagctgtgagtgttatCACGTTGTGGTTATACATACGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATGCGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGAGTTTTATCGCATTGTGGTTATACATACGAGCTGTGAGTTTTATCGCATTGTGGTTATACATACGAGCTGTGAGTGTTATCGTGTTGTGGTTATACATACGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGCGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGTGTGTTATCGCGttgtggttatatacagtataagaCCTATGTGTTATTGCATTCGTTACTCTGCAATTATCCACTGCTTGCTTGTTTTCAGCTAAGGTTATATGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTGAAGGTCAGTACAGCCTATTTCACCCTATTTTAACATTTCTTTTTGATACACTTCAGTtattgtttgtctgtctgtgttttgttTGTGCGTATTACAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAATATAGAAAAATTCAAGAGTTCAAGGTAGTAATTAACTTGTAATGTAAACTATGATTAACTTAGTGAACCGGGAAAAAGTCATACTAATTATATTACTATAGTGCGTTAATGCGTAACATGTATTTTGTCTCTACAAAGTTTGTCTTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCGATCATATTTGTCATCGATAGTGGAGACAAGTTACGAATGGTCGTTGCCAAAGAGGAACTTGATACTCTTCTCAATCACCAAGACATCTGCAGTAGGAGGATGCCTGTGCTGCTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTCAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAGAACATCAAGGACAAACCCTGGCACATCTGTGCCAGTAATGCTGTAAAAGGAGAGGGCCTACAGGAGGGGGTGGACTGGCTACAAGGTACATAactgcgtgtgcgtgcatgtacgTGTACTTTTTTCTGATGGAATTCTGGCACCTATATTGAATCATTCTGTTTTGTTCTACCTTACCCATAGAGCAAATTGCACAGTAAGTATAATGTGTGCTCACATTAGTTTATGTCACTGTGGtggatgtagatgatgatgttgttgatggGTTTGGAGCAGGGGAGACTATTCAGTCTGTAACAGGTATAATGTTGACGTGTGTCTCATGATAATTCATCTCCCCTACTCTTAACCCTCTAGTGAAGGGCTTTTCTAATGTAGTTGTGGAGCTTCAGGTCTCATTGTTGAGGCTGTTTGTTGTTGTAACTATCATCTCATGAATTGTCCATACATTTATAAACATATATTGTCCATATGTTTATCAACAGATCATATCAGAATAATGAATGAAATTAAATGAATGAAAGGCTTACGATGAAGGATTgtgatggagagaagagggaCCTCCACAACTACAGCATGGCTCCTCCAACCAGCTGTGTCATTGCTTATCTTCTGTCactatttacatacagtatgtggtgCAAGGGAATCatctgtttttcctttctatttgATACTCTGTCATGATGCCTACTGAtgcctactgtatgatactgtTGTAAAGTGTGGATGTGAAGTGTTGTTGAACCGCTTGCTGCAGTGAAGAGAGACCACCCTCTGAGATGGATTCACCTGGGATGGCATGTAGTCTCGGGGTTTTACGAGCGTTGGACCAGCAACCGAAATGTCgatggttcgaatccccaagccaacgaggtgaaaaatctgtcgatgtccccttgagcaaggtacttaaccctaattgctcttgtaAGTCGCTCTTGATAAGAGCctctgctgaatgactaaaatgtaaatgtgatcaGACTGTTATTCAGTTACAGCACgtgatgtgtaactgtgttgtctgCTTGTGGAAAGATATGATTAATGTATTCTGTTGTTAAACATTTTACCCTCCATATTTCTGAACTGTACTTGATGCTCGTTTTGTATGCCATTAAATGTGCTGTGATGTTTTCAGACATAGTACACCAGTCAGTGCTACAATATATTGCTATATATGTTGGGATGTTTTAATGAAAACAATTAAAGGCGTAGCATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055997 lncRNA upstream 1156 28974514 ~ 28976734 (+) True epha6
TU2056099 lncRNA upstream 36752 28932411 ~ 28941138 (+) True G1796642
TU2056091 lncRNA upstream 81014 28896642 ~ 28896876 (+) True G1796636
TU2056089 lncRNA upstream 84090 28893212 ~ 28893800 (+) True G1796634
TU2056082 lncRNA upstream 96099 28881516 ~ 28881791 (+) True G1796627
TU2056160 lncRNA downstream 2346 28986572 ~ 28986873 (+) True G1796683
TU2056162 lncRNA downstream 15355 28999581 ~ 28999793 (+) True G1796685
TU2056346 lncRNA downstream 35817 29020043 ~ 29020596 (+) True G1796835
TU2056350 lncRNA downstream 40392 29024618 ~ 29025673 (+) True G1796839
TU2056352 lncRNA downstream 42849 29027075 ~ 29027468 (+) True G1796841
XR_005038811.1 mRNA upstream 1151 28755803 ~ 28976739 (+) False epha6
XM_036959046.1 mRNA upstream 1151 28755807 ~ 28976739 (+) False epha6
XM_036959048.1 mRNA upstream 18908 28755790 ~ 28958982 (+) False epha6
XM_021579434.2 mRNA upstream 275226 28701867 ~ 28702664 (+) True LOC110501697
XM_036959042.1 mRNA upstream 581540 28236220 ~ 28396350 (+) False LOC110502084
XM_021579991.2 mRNA downstream 9107 28993333 ~ 28994549 (+) True LOC110502121
XM_021579436.2 mRNA downstream 13537 28997763 ~ 29010281 (+) False LOC110501700
XM_036959049.1 mRNA downstream 79413 29063639 ~ 29094498 (+) False LOC110501701
XM_036959051.1 mRNA downstream 79413 29063639 ~ 29094498 (+) False LOC110501701
XM_036959050.1 mRNA downstream 79497 29063723 ~ 29094498 (+) True LOC110501701
TU2054913 other upstream 885774 28091565 ~ 28092116 (+) True G1795550
TU2054839 other upstream 939812 28036928 ~ 28038078 (+) True LOC110501693
TU2054765 other upstream 1065015 27903582 ~ 27912875 (+) True G1795411
TU2052918 other upstream 2661647 26315826 ~ 26316243 (+) True G1793717
TU2052189 other upstream 3246136 25731326 ~ 25731754 (+) True G1793045
TU2055989 other downstream 24398 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other downstream 24398 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other downstream 24398 29008624 ~ 29010273 (+) True LOC110501700
TU2057150 other downstream 759966 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 939331 29923557 ~ 29925382 (+) True LOC118943632

Expression Profile