RNA id: XM_021579540.2


Basic Information

Item Value
RNA id XM_021579540.2
length 3759
RNA type mRNA
GC content 0.52
exon number 21
gene id cwc22
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32094174 ~ 32144432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCTACGTGTATGTCCGCTCTTTTTGGGTCTTACTGGTATCCGTAGCAATACTTGCGGAAGAGGATAAGGGAGAAAATGGCTACAGAGACAATCGACAACGATGTAGCAGTGGAGCTAAGCCCTAATTCTAGAGAAGAGCCTCCCAGGACCAGTGGCATGGATCAGCCCCGGAGGAGCAGGAGTAGGAGTGGCAGCAGGAGCCTGTccgaggaaggagggagagagaacaatgtGGCACAGCAGAAGAGCAATGTAGAAGCACCAGAGGGGGCAGATAGTCCTGCAGCCGGTCCCAGAGACGAAGGCCACGGAGAGGCCAGCCCTGGATCGGAGGCCCCCGTTCTAGGCAGTCCCGGAGTAGCCAGCTCCAAAGCCACCAGGGGCAGTAGGGTCCCTTCCAATGCCAGTGTCAGCCAGGAGGAGGAGTCTAGTGGCTCTGACAATGAGAGCAGTGATGAAGACAGTGATGAGGGAGTGGCCCGCAGGATGAAGAGCAGTGTGGCACAGATCGTGCATGGTCCAGATGACCAGAGTGTAAACAAAGGCAGGAGCCCCACCCCAGATGACCGGGATGATGATCGCCGTAGGTCCCGCTCCAGGTCCCGTTCCAGAAGTCAGGAGAGGGATCGGCGCTATGGTAGAGGAGGTTACAGCAGGTCAAGGGATGATGATCGAGACAGATATTACGACCGCTATGAGCGCCGGTCAAGTCGGGACAGAGAGGCTGAGTTCAGGAGGAGAGGCCGATCGCCCTCCCCAGCCCAGAAGGACCCTGCTGCAGAGGAACCACcagtgaagaagaagaaggatgaaCTGGACCCTATCCTGACCCGAACTGGTGGAGCCTATATCCCCCCAGCCAAGCTACGTATGATGCAGGCTCAGATCACTGACAAGAGCAGTCTGGCTTATCAGCGTATGAGCTGGGAGGCTCTGAAGAAGTCCATCAATGGTCTGATAAACAAGGTGAACGTATCCAACATCGCCATGATCATCCAGGAACTGCTGCAGGAGAACATTGTCAGGGGCAGAGGTCTCCTGGCCAGGTCCACCCTGCAGGCCCAGAGTGCCTCGGCCACCTTCACTCACGTCTATGCTGCTGTGGTAGCCATCATCAACTCCAAGTTTCCTCAGATAGGAGAGCTCATCCTCAAGAGACTCATCCTTAACTTCCGCAAGGGCTACCGGAGGAACGACAAGGCACAATGTCTCACGGCATCAAAGTTCGTTGCCCACCTGGTCAATCAGAATGTGGCCCATGAGGTGCTGTGTCTGGAGATGTTGACTCTGCTCCTGGAGAGACCTACAGATGACAGCGTGGAGGTGTCCATCAGCTTCCTTAAGGAGTGTGGCCTCAAACTCACTGAAGTCTCCCCTAGAGGCATCAATGCCATCTTCGAGCGGCTGCGTAACATCCTTCACGAGTCGGAGATAGACAAGCGTGTGCAGTACATGATCGAGGTGATGTTCGCCATTAGGAAGGACGGGTTTAAGGACCACCCTATCGTTCCCGAGGGGCTGGACCTAGTGGAGGAGGACGATCAGTTCACACACATGCTGCCCCTAGAGGATGACTACAACCAAGAAGATATACTGAATGTCTTTAAGATGGATCCAGACTTCTTGGAGAACGAGGAGAAGTACAAAGCAATTAAGAAGGAAATCCTGGATGAGGGCAGCAGTGACTCTGGAGAAGACGTGGATGGAAGTgacgatgatgaagatgatggagaaaaagagggggaagagggcgGAGATGAAGCAGAGAAAGTCACCATCTTCGACCAGACGGAAGTCAACTTGGTCGCATTTCGCCGCACCATCTATCTCGCCATCCAGTCAAGTTTGGATTTTGAGGAGTGTGCCCACAAGTTGATCAAGATGGACTTTCCTGACAGCCAAACAAAAGAGCTGTGCAACATGATTCTAGACTGCTGTGCCCAACAAAGGACCTACGAGAAGTTCTTTGGTCTTCTAGCAGGGAGGTTTTGTCTGCTGAAGAAGGACTATATGGAGAGTTTTGAGGCCATCTTCATGGAGCAGTATGAAACCATCCATCGCCTAGAGACCAATAAACTGAGAAACGTTGCCAGGATGTTTGCTCATCTCCTTTACACTGACTCTGTCCCGTGGAGTGTGCTGGAATGTATTAAAGTCAGTGAGGACACCACCACGTCGTCCAGTCGAATCTTCGTCAAGATCTTGTTCCAGGAGCTCTGTGCCTACATGGGTCTGCCCAGGCTCAATGAACGACTCAAGGATATGACGTTGCAGCCCTTCTTCGAGGGTCTCTTCCCTCGTGACAACCCCAGGAACACCCGATTCGCCATAAATTTCTTCACCTCCATTGGCCTGGGTGGACTTACGGATGAGCTCCGTGAGCATCTGAAGAATGCCCCCAAGATAATCATGACCCAGAACCAGGACGTGGAGTCATCAGACTCCGactcgtcctcttcctcctctgactCGTCTTCCTCAGACAGTGACAGCAGCGACAGTGACAGCTCTGACTCCTCCACTGACTCCTCATCCAGCAACAGCTCAGATTCTGATTCAAGGCGTAAAAAGAGTAAGGGCCAGAGCAAAAAGAAGAGCGACAAAGACAAGAAGAAAGACAAGAAGACCAAGGACAAGGCTTCTTCCAAAAAGATCTCGCTTCAGAAGTCACCTCTGGAGGAACGGCCCAATAGGAGTCTGAGACACGAGAACCGTCGCCGTGATGACAGCAGTAGCGATGAAGAGGTGGCGGAGCGCGGCGGGGGGAGACCCCGGCCTGAGGACCGCCACAAAGCCTCTCGCCACCGTGGTCGAGTAGAAGACGCTCCGCCACCCACACACGAGAGACCCGACCGTTCTGACCGTGGAGGGCACAATGACAAGGAGCTGCCTCGTGGCAGGCCTGGCAGAGACCGAGACTATGAGGACGGGGACAGACAGCCAGAGGCCCGCAGGCACAACAAGGAcgatgggggggggggcgatGGGAAACACCAAACCCCCCAGGCCGACCGTGACCGAGTCAGACACCGTAGccctgagaaagagaaggaaccaGTGAGCAGTGGCGGCagggacagagaaaaagagaggtcaAAGTCACGGGAGAGGAGCAGCCGCAAGGAGAAGGACATGGATTCCTCCAGGGACTCGAACAGGAACGGGGTGGAGCGGCAGGCAGAGAGGGCAGAGCGGGCGGACAAGGAGAACAGGGAGAACCGCCATCACTCTGACAGATACAGAGAACCCAGGCGAAACGAGGAACGGAGCAGGAATAGCTCCCCGCGCAGACGGAGATAGCCGGACCAATGAGAAAAGTAGTAGGCTTCCTTTCCAATGTCCATACTTACATCATTTGAAGTTGTGTGCTACTGCAGACATTGAAACAGAGCCATAGTAGTTATGATAGTCATGCTGTTCATGTGCCAGCTTGAACTCATCCATCTCATTCTCTgtcattgtctgtctctctcaatgtATGCATCTTATGCATAGCCTTTACAATTTTATATTGCCCAATGAAATCTTTCTTAGGAATGGTTCAGCGGTTGTATAGGAACAATAACAGTGCAGAGATCTGCTTGCAAAAGTAGTGTTTCTATGATTGTTTCTTTCTCTGGGTGTTATCAATGTAAGACTGGTAAAGTCAAGAAAGCTTGAGTTTGTATTTGATGCATCAACCAATTTTGTATTAGTGGCAACCTATTTTTGTGTTGATAAAAAATAAGACAAAACATAAAAAATCATTCAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2059743 lncRNA upstream 5616 32087155 ~ 32088558 (+) True G1799951
TU2059700 lncRNA upstream 85378 32008504 ~ 32008796 (+) True G1799909
TU2059653 lncRNA upstream 95860 31944586 ~ 31998314 (+) True G1799863
TU2059661 lncRNA upstream 137568 31951261 ~ 31956606 (+) True G1799871
TU2059649 lncRNA upstream 156005 31937151 ~ 31938169 (+) True G1799859
TU2060572 lncRNA downstream 666648 32811080 ~ 32811350 (+) True G1800724
TU2060574 lncRNA downstream 671672 32816104 ~ 32816758 (+) True LOC110502125
TU2060612 lncRNA downstream 758494 32902926 ~ 32903150 (+) True G1800759
TU2060614 lncRNA downstream 773637 32918069 ~ 32918687 (+) True G1800761
TU2060662 lncRNA downstream 1026807 33171239 ~ 33174934 (+) False G1800800
XR_005038821.1 mRNA upstream 357210 31644420 ~ 31736964 (+) False cerkl
XM_021579536.2 mRNA upstream 357210 31644423 ~ 31736964 (+) False cerkl
XM_021579534.2 mRNA upstream 455576 31635510 ~ 31638598 (+) True neurod1
XM_036959121.1 mRNA upstream 558653 31458011 ~ 31535521 (+) False pde1a
XM_036959123.1 mRNA upstream 558653 31462452 ~ 31535521 (+) False pde1a
XM_021579542.2 mRNA downstream 10863 32155295 ~ 32312355 (+) False znf385b
XM_021579544.2 mRNA downstream 69378 32213810 ~ 32312355 (+) False znf385b
XM_021579543.2 mRNA downstream 89657 32234089 ~ 32312355 (+) True znf385b
XM_021579545.2 mRNA downstream 172691 32317123 ~ 32374208 (+) False LOC110501767
XM_021579547.2 mRNA downstream 172691 32317123 ~ 32374208 (+) False LOC110501767
TU2058268 other upstream 796755 31293552 ~ 31297419 (+) True G1798597
TU2058247 other upstream 801969 31246481 ~ 31292205 (+) True G1798579
TU2058047 other upstream 1203107 30888661 ~ 30891067 (+) False G1798397
TU2059894 other downstream 223204 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 766361 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 3596007 35740439 ~ 35759426 (+) False LOC110501795
TU2064995 other downstream 3730130 35874562 ~ 35875452 (+) True G1804873
TU2065354 other downstream 4219164 36363596 ~ 36363930 (+) True G1805191

Expression Profile