RNA id: TU2064746


Basic Information

Item Value
RNA id TU2064746
length 1694
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110501795
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35740427 ~ 35760519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAATGTTCTAAAAGCCTGGATGATCACAGAAGAGCAGCAAAACCTAACGAAGAGGAACAGATGGGATATCAAGTATCAAATCCACACCAAGTTGTGGACCCTGCTGGACTGCATCCAGATGGAGGTGGGTCCTGGACCCAGACACAGCCACTCTGCCATGACCGTCCTGGACTGCATGTACCTGTTTGGGGGTCTGAGGGAGCAGAGGGACCTGTGGAGGTGGAACTCCACATGTCACTCCTGGAGCTGTCTCAAAGCCATGTCAGGCCCCTCCCTCTAAGCTGGTAGGCCACTCAGCTTATTCCTGCCCATATCATAagtccaccgccaccatggggcagtctgtttacaacattgacatcagcaaacctctcACCCACaagacgccatacacgctgtctgccatctagTCAGTACAGTTGATACCGGGATTAATctatgaagagcacacttctccagcatgccattGGCAATCGCAGGTGAGCATttacccactgaagtcggttacgacaccgAATTGCAGTCAAGTCAttaccctggtgaggacgacaagcatgcagatgagcttccctgagacggtttctgacagtttgtacagATATTCTTTGCTTGTGCAAAatcacagtttcatcagctgtccgggtggctggtctcagatgatcccgcaggtgcagaagccagatgtggaggtcctgggctggcgtggttacgcATGTTtagcggttgtgaggccagttcgAAGTACTGCCatattctgtaaaatgatgttggaggtggcttatggtagagaaattaacattcaattctctggcaaccgctctggtagacattcctgtaGTCTGCATGCCAAATGCACAAtctctcaaaacttgaaacatctgtggcattgtgttgtgtgacaaaactacacattttagagtggcctgttTTAATCACCTTCCTGataagccacacctgtcaggtggatggattatcttggcaaaagataaatgctcactaacagggatgtaaacaaatttgtgcacaaaatatgagagaaataagctttttgtgtgcgtatggaaaatttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgctatgtttatatttttgttcagtaaatcaGTCAGAATTAAGAGAAAGATCTATGTAAATCTATGTATCTATGTAAGATCTATGTATCTATGTAAAGATCTATGAAAGATCTGTGTTTGCTGAAGCAAGTTACACTAAATATatgatataataatataatgtatgccatttagcagatgctttttcTCCACAAGTACAGCTTCACCACCCAGACCTGGGTGAAGCTAGCCGTGCTACCCAGCTCAAACCCTCCACCCCACAGGATCTACCACTGCTGTGCTGGCCTAGGCCCCAGCTACCAGCCTGTCgtgaccaccaccaccagcaccaccctGACCCCCAGCATCACCATCAGAAACAGTCTGGACAGCAATCTACAGTCATTCAAAAACAAATGCTTCCCTTCCTCCTCAGAGTTAGAGGGCACTATAGAGCTGGAGACGTTAAGTAGCTCAGAGAAGCTATTGACCGACCTGGGGGACTATTGTAATGGTCTAAGTGGGAACTATGCTTAGCGCTTTGGGAACTGTCTGACTTCTTAAAATAATTGTTATACTTTTTTCATCAAACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2064761 lncRNA upstream 40188 35699520 ~ 35700251 (+) True G1804655
TU2064759 lncRNA upstream 41002 35697608 ~ 35699437 (+) True G1804653
TU2064194 lncRNA upstream 360896 35374594 ~ 35379543 (+) True G1804125
TU2064038 lncRNA upstream 563734 35130623 ~ 35176705 (+) True G1803971
TU2064030 lncRNA upstream 613479 35126521 ~ 35126960 (+) True G1803963
TU2064788 lncRNA downstream 19591 35779017 ~ 35780368 (+) True LOC110501797
TU2064946 lncRNA downstream 64662 35824088 ~ 35827883 (+) True G1804830
TU2065091 lncRNA downstream 209116 35968542 ~ 35968910 (+) True G1804962
TU2065100 lncRNA downstream 224016 35983442 ~ 35983644 (+) True G1804971
TU2065102 lncRNA downstream 225393 35984819 ~ 35985033 (+) True G1804973
XR_005038815.1 mRNA upstream 690981 35047732 ~ 35049458 (+) True LOC118943586
XM_021579625.2 mRNA upstream 949937 34781505 ~ 34790502 (+) False LOC110501793
XM_021579627.2 mRNA upstream 949937 34781552 ~ 34790502 (+) False LOC110501793
XM_021579626.2 mRNA upstream 949937 34781591 ~ 34790502 (+) True LOC110501793
XM_021579618.2 mRNA upstream 968397 34602879 ~ 34772042 (+) False LOC110501792
XM_021579634.2 mRNA downstream 9755 35769181 ~ 35780544 (+) False LOC110501797
XR_002470255.2 mRNA downstream 23757 35783183 ~ 35814912 (+) True LOC110501798
XM_036959175.1 mRNA downstream 184084 35943510 ~ 36060137 (+) False LOC110502095
XM_036959176.1 mRNA downstream 184084 35943510 ~ 36060137 (+) False LOC110502095
XM_021579637.2 mRNA downstream 483729 36243155 ~ 36247834 (+) True LOC110501801
TU2060607 other upstream 2826257 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 3366258 32367636 ~ 32374181 (+) True LOC110501767
TU2058268 other upstream 4443020 31293552 ~ 31297419 (+) True G1798597
TU2058247 other upstream 4448234 31246481 ~ 31292205 (+) True G1798579
TU2058048 other upstream 4849372 30888661 ~ 30891067 (+) False G1798397
TU2064995 other downstream 115136 35874562 ~ 35875452 (+) True G1804873
TU2065354 other downstream 604170 36363596 ~ 36363930 (+) True G1805191
TU2065389 other downstream 675574 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 2320440 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 2539701 38299127 ~ 38302575 (+) False G1807306

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016729 True 6267 mRNA 0.46 29 CM030122.1 28664814 ~ 28681501 (+)