RNA id: TU2070494


Basic Information

Item Value
RNA id TU2070494
length 1542
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1809702
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40382957 ~ 40477289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAACATTTATTGGTttcaaaatgaaataaaaatgacTTGCACCGGCATTGAACAGCCTTTCAGAATCcacacatttgttttttttttatctttgaGAGAAATTAAAGGAAAAATAGATCATTTTTTATATATTCAGTTGTATAAATGTGCAAACTGTTGTTTCTTCCAGTGACCCAGTAAGTATATCATTTAAAAAGACCTAATGAAAGATTTGACACTGTAGGCCTtgtagaagaggagggaggacagtgtggtggagagagagagagagagaggggaggccatCCAAGCAGATGATTGCTAAAATATGCCGTTGCGGTGGAGGAGTGTCATTTTAAATGAAGTTAAAAACCAGGGGTTTCAAACAAGCCTTTTTTCCCCGTTGCTCTCATCTGTGCCTGCCTGTGAACAACACACATACAGAACGTTCACTGTGTAATAGAGAACTGATTGAATTATTTAGCTACTATATAAATTATTTACAAGGTGCAGGTCTTTTCATTTAACAATAGACTCTGACAGGGGGTGACTTCATTTTGCGTTTCTTGGAGAATAAAGCAGTAGACTTTGGAGAGAAAGGCACAACTAGAGACCCATTGTGTAGCCGAGGGCAACTTCATCATGTACCGGCCACAATATGGGGCAAGTGGCTGGTGGCAGGCTGGCCGATAGTCAGCTACCCTGGGGATGTGGGGAAGCTTTGGTTGAGTTAAACTGAACCAGGCCAGACACTGCAACTGGGCTGGGTGAGTAATAATGAGAGAGCTGAGCTTTGGGCCTGACTCAAGATTTCAACAACTATAAAACAAatgaacaaataaaataaaacagaaatacaggCTTTTGATGTGTTCCGGCCTGTTCTCAAAACAGAGAGCAGACAGGTTATTAATATTTGGAACTTCAATAATCGTGTTTTTTTGGATATTCGTTCACGTCAGTTCAGTTACATTTTGTTCTTTTTCATCAAACCGCTAGTAAGAACATTACGAAGTACAACACATTTCCCCCCAACCAAGTCTCTACAAATCAAGTGGAAAAACAACCCTTTACATCAAGCCAACCTAGTGAgtgaagagggagggggaaaggaggggcTGGGGGGAGTGATGGCAACAGGAAGTGACTGGCGGTGCTGGTGAGGGGTCAGGGTTTAAAAGGCGAGCCAGGTGTCCTTAACGCCCTCTACTGGGAACTGGCCTTCTCGGGGAGTGTCTGTGGCCGTAACCTCGGCCATGGCACCTGCTCGTGGTAAGTCTGATGGAGGATCAGGGGCCGTTGTGGTTCATCCTGCACAGCGTACCTGGAGGGGAACGTGACCAGGAGGGATTAGGTGGAGGCTGGGTTGACAGGGGTTTGACCGTGGGGGTTTGGCGTGGTGGTGGTCACCGTTAGCCATCGACTGCCAGACAACGCGGCTGTGATGGTAGTGGTGCTCTCGGAGCCATCAGACCACAGCCCTGACTCTGGAGAGCTCACCTAGCAGAGAGTCCGCCTCGGTCCGGCTGATCCCCTCCGGCAGCTCAGTCATCTCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070471 lncRNA downstream 24702 40391252 ~ 40391974 (-) True G1809683
TU2070302 lncRNA downstream 123637 40292840 ~ 40293039 (-) True G1809541
TU2070270 lncRNA downstream 142928 40273400 ~ 40273748 (-) True G1809509
TU2070266 lncRNA downstream 145711 40270740 ~ 40270965 (-) True G1809505
TU2070259 lncRNA downstream 150793 40265654 ~ 40265883 (-) True G1809498
TU2070539 lncRNA upstream 20871 40439110 ~ 40440904 (-) True G1809737
TU2070548 lncRNA upstream 24223 40442462 ~ 40448038 (-) True G1809742
TU2070557 lncRNA upstream 72458 40490697 ~ 40491131 (-) True G1809751
TU2070563 lncRNA upstream 85342 40503581 ~ 40503819 (-) True G1809756
TU2070566 lncRNA upstream 89192 40507431 ~ 40507932 (-) True G1809758
XR_005038968.1 mRNA downstream 131834 40283405 ~ 40284842 (-) True LOC118943637
XM_036959305.1 mRNA downstream 246535 40084457 ~ 40170141 (-) True LOC110501866
XM_036959304.1 mRNA downstream 246537 40084457 ~ 40170139 (-) False LOC110501866
XM_036959077.1 mRNA downstream 389523 39960431 ~ 40027153 (-) True LOC110501865
XM_021579711.2 mRNA downstream 563307 39850855 ~ 39853369 (-) True tmem177
XM_036959321.1 mRNA upstream 33358 40451597 ~ 40494774 (-) True LOC110501872
XM_021579726.2 mRNA upstream 257064 40675303 ~ 40684544 (-) True LOC110501875
XM_036959327.1 mRNA upstream 356969 40775208 ~ 40813437 (-) False LOC110501878
XM_036959331.1 mRNA upstream 416937 40835176 ~ 40845419 (-) False LOC110501879
XM_036959329.1 mRNA upstream 416937 40835176 ~ 40858542 (-) False LOC110501879
TU2068897 other downstream 1472146 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 1472146 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 1804389 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2203489 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 2221580 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 318409 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 1029660 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 1186735 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1968583 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 2186464 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile